New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4558313158 (1.060)9 (0.070) 7/154 NT 6.1% intergenic (‑24/+41) hypT/iadA hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase
?NC_000913 = 4558336 141 (1.100)intergenic (‑47/+18) hypT/iadA hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase
Rejected: Frequency below cutoff threshold.

Only 100 of 199 total aligned reads displayed.

ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCAATG  >  NC_000913/4558239‑4558435
                                                                                                 |                                                                                                   
 tAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCggg                                                                                                  <  1:1032392‑M2/100‑4 (MQ=255)
 tAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCggg                                                                                                  >  2:1320394‑M2/1‑97 (MQ=255)
  aaaGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggn                                                                                                 >  1:2597468‑M2/1‑96 (MQ=255)
  aaaGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggc                                                                                                 >  1:2572752‑M2/1‑96 (MQ=255)
    aGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGACCATTCgggcgg                                                                                               >  1:2755404‑M2/1‑94 (MQ=255)
     gCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc                                                                                              <  1:2499003‑M2/100‑8 (MQ=255)
     gCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc                                                                                              <  2:3244847‑M2/100‑8 (MQ=255)
      ccATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggct                                                                                             >  2:1831871‑M2/1‑92 (MQ=255)
      acATTTGGTTTCAATATTATGCCCAATCGCACCACAGTCACCCCTTACGTTTCACTCTGTCAGCCGCCCTTGCGGGCATTTTACTTCCATCCGGGCGGCt                                                                                             <  2:3497435/99‑1 (MQ=255)
       cATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg                                                                                            >  1:128722‑M2/1‑91 (MQ=255)
       cATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg                                                                                            <  1:890226‑M2/100‑10 (MQ=255)
       cATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg                                                                                            >  1:2008710‑M2/1‑91 (MQ=255)
         tttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac                                                                                          >  1:3713927‑M2/1‑89 (MQ=255)
         tttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac                                                                                          >  1:3930910‑M2/1‑89 (MQ=255)
         tttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac                                                                                          >  2:79379‑M2/1‑89 (MQ=255)
          ttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca                                                                                         >  2:128295‑M2/1‑88 (MQ=255)
          ttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca                                                                                         >  1:4134439‑M2/1‑88 (MQ=255)
           tGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa                                                                                        >  2:2880101/1‑100 (MQ=255)
           tGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa                                                                                        >  1:835075/1‑100 (MQ=255)
              tttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg                                                                                     >  1:3087157/1‑100 (MQ=255)
               ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt                                                                                    >  2:3009764/1‑100 (MQ=255)
                tCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACGCTGTCAGCCGCCCTTGCGGGTATTCTACGTCCATTCGGGCGGCTGACAACCGtt                                                                                   <  2:1025371/100‑1 (MQ=255)
                 cAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt                                                                                  <  1:473853/100‑1 (MQ=255)
                  aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTa                                                                                 <  2:1462956/100‑1 (MQ=255)
                   atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa                                                                                >  1:2229834/1‑100 (MQ=255)
                    tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg                                                                               <  2:3665737/100‑1 (MQ=255)
                    tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg                                                                               <  1:1536419/100‑1 (MQ=255)
                    tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg                                                                               <  2:575141/100‑1 (MQ=255)
                       tatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCg                                                                            <  2:1403700/100‑1 (MQ=255)
                       tatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCg                                                                            >  1:424770/1‑100 (MQ=255)
                        atGCAAAATCGCACCACAGTCGTCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt                                                                           >  1:944315/1‑100 (MQ=255)
                        atGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt                                                                           >  1:93230/1‑100 (MQ=255)
                        atGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt                                                                           <  1:1882942/100‑1 (MQ=255)
                         tGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGtt                                                                          <  2:2707683/100‑1 (MQ=255)
                           cAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc                                                                        <  1:3469215/100‑1 (MQ=255)
                            aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa                                                                       >  2:2481372/1‑100 (MQ=255)
                            aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa                                                                       <  1:3499387/100‑1 (MQ=255)
                              aaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaaa                                                                     <  2:1449194/100‑1 (MQ=255)
                               aTCGCACCACAGTCAACCTTTACGTTTTACTCGTTCAGCCGCCCGTGCGGGCATTCTACGTCCATGCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAAc                                                                    <  2:863405/100‑1 (MQ=255)
                                tCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACg                                                                   <  1:1606419/100‑1 (MQ=255)
                                tCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACg                                                                   <  1:2948896/100‑1 (MQ=255)
                                 cGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt                                                                  <  2:3305220/100‑1 (MQ=255)
                                  gCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGtt                                                                 <  2:2768445/100‑1 (MQ=255)
                                    accaccTTCATCCATTCCGTTTTCCTCTGTCCGCCGCCCTGGTGGGTATTCTGCGGCCAGTCGGGCGGCTCACAACCCTTTAAGCCGTTTCAAACGTTcc                                                               <  2:383845/100‑1 (MQ=255)
                                    accacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTcc                                                               <  1:3206227/100‑1 (MQ=255)
                                      cacaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt                                                             <  2:3479841/100‑1 (MQ=255)
                                       acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCttt                                                            >  1:2134369/1‑100 (MQ=255)
                                          gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAc                                                         <  1:1785145/100‑1 (MQ=255)
                                            cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACg                                                        <  2:2027562/99‑1 (MQ=255)
                                            cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACg                                                        <  1:765693/99‑1 (MQ=255)
                                            cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGc                                                       <  1:335236/100‑1 (MQ=255)
                                               ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAgg                                                    >  1:990488/1‑100 (MQ=255)
                                                 aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCt                                                  >  1:3034519/1‑100 (MQ=255)
                                                  ttACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCtt                                                 <  1:1847039/100‑1 (MQ=255)
                                                  ttACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCtt                                                 >  1:409522/1‑100 (MQ=255)
                                                     cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGc                                              >  2:283553/1‑100 (MQ=255)
                                                     cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGc                                              <  2:2672223/100‑1 (MQ=255)
                                                     cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGc                                              <  1:3591632/100‑1 (MQ=255)
                                                       ttttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCg                                            <  1:196432/100‑1 (MQ=255)
                                                       ttttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATGCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCg                                            <  1:1331635/100‑1 (MQ=255)
                                                         ttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTc                                          <  2:3560855/100‑1 (MQ=255)
                                                              ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaacca                                     <  2:980687‑M2/100‑65 (MQ=255)
                                                              ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGa                                     >  2:487076/1‑100 (MQ=255)
                                                              ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGa                                     <  1:3238565/100‑1 (MQ=255)
                                                              ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCCTCTTTGa                                     <  1:2197427/100‑1 (MQ=255)
                                                                gTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTTAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGAcn                                   <  2:2247549/100‑2 (MQ=255)
                                                                gTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGAcc                                   >  2:509185/1‑100 (MQ=255)
                                                                gTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGAcc                                   >  1:1829484/1‑100 (MQ=255)
                                                                gTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGAcc                                   >  1:169212/1‑100 (MQ=255)
                                                                 tCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCa                                  <  1:3262129/100‑1 (MQ=255)
                                                                  cAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaaccaaatg                                 <  1:1220506‑M2/100‑69 (MQ=255)
                                                                  cAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgcggtgcgattttgcataatattgaaaccaaatg                                 <  2:2365684‑M2/100‑69 (MQ=255)
                                                                   aGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATc                                <  1:1683507/100‑1 (MQ=255)
                                                                    gccgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATc                                <  2:3557836/99‑1 (MQ=255)
                                                                    gccgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCa                               >  2:421971/1‑100 (MQ=255)
                                                                    gccgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCa                               >  2:3961455/1‑100 (MQ=255)
                                                                     ccgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAg                              >  1:1007961/1‑100 (MQ=255)
                                                                      cgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAg                              <  2:2505370/99‑1 (MQ=255)
                                                                       gccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCC‑TTCACGCAGGCTTTGCCGTCTTTGACCATCAGttn                           <  2:4044152/100‑2 (MQ=255)
                                                                         ccTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTg                          <  1:3180033/100‑1 (MQ=255)
                                                                          cTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGc                         <  2:1410844/100‑1 (MQ=255)
                                                                           ttGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGcc                        >  2:1734321/1‑100 (MQ=255)
                                                                            tGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaaccaaatggctttatgat                       >  1:2413973‑M2/1‑22 (MQ=255)
                                                                            tGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCcg                       <  1:686544/100‑1 (MQ=255)
                                                                              cGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCcgcg                     >  2:336283/1‑100 (MQ=255)
                                                                              cGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCcgcg                     >  1:2882360/1‑100 (MQ=255)
                                                                              cGGGCATTCTACGTCCATTCGGGCGGCTGACAAACGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATAAGTTTGcctc                      >  2:101569/1‑97 (MQ=255)
                                                                                cttccgatctgTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAg                   <  1:1405492/90‑1 (MQ=255)
                                                                                     tCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGtat              <  2:3459354/100‑1 (MQ=255)
                                                                                     tCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGtat              <  2:765782/100‑1 (MQ=255)
                                                                                      cTACGTCCATTCTGGCGGCTGACAACCTTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTCCCGTCTTTGACCATCAGTTTGCCGCGAGCGtatc             <  2:1563018/100‑2 (MQ=255)
                                                                                      cTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGtata             >  1:3336260/1‑100 (MQ=255)
                                                                                         cGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCt          >  2:2100589/1‑100 (MQ=255)
                                                                                         cGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCt          >  2:3173049/1‑100 (MQ=255)
                                                                                          gTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTg         >  1:1924559/1‑100 (MQ=255)
                                                                                           tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCGGCGAGCGTATACCTGc        >  1:3644918/1‑100 (MQ=255)
                                                                                             cATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTc      <  1:3955360/100‑1 (MQ=255)
                                                                                              aTTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTc      >  2:2797563/1‑99 (MQ=255)
                                                                                              aTTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCa     >  1:1018641/1‑100 (MQ=255)
                                                                                                 cGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCAATg  <  2:2134366/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCAATG  >  NC_000913/4558239‑4558435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.