| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 41.0% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 41.0% | 323.1 / inf | 322 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (97/93); new base C (122/10); total (219/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.63e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-03 | |||||||||||
Only 100 of 323 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGCGCGCTGTGTTTATGACGGATGCGGCGTTAACGCCTTa > 2:2825249/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:3816725/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 2:2707694/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:146899/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:451843/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1047547/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATa < 2:266267/100‑1 (MQ=37) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 2:2122988/1‑100 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 2:1746596/100‑2 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:305772/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATCCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:3975185/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa < 2:3473602/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 1:712390/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:3014917/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:2092396/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:3953558/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc > 1:1012826/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:948507/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:2334001/100‑1 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa < 1:1961493/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1799076/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 2:1945320/100‑1 (MQ=255) acGGGTATACAAATAGTTCACAGAGTGCGCTTAGTTTCTGCAGGATGCGGCGTTAAAGCCTTATCCGACCTAC‑AAAGTCGTTCAAGTTCAATACATTG‑Ca > 2:1161765/2‑100 (MQ=21) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑c < 2:3732767/95‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCg < 2:2642480/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTa > 1:3090983/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGc < 1:860543/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGcc > 1:1093793/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTACTCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGCAGGcc < 2:1686147/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTg > 2:4065163/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGa > 1:1554201/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGa > 1:3346544/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATa < 2:2174638/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGc > 2:3349954/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCgg < 1:2174010/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAg < 2:512306/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACACTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGTCTGATAAGCgggg < 1:2825256/100‑3 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAgc < 1:2467864/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCa < 2:36542/100‑1 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCAt > 1:3657878/1‑100 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCAt > 2:1606354/1‑100 (MQ=255) tGTCTATGCCAGAGGGGGCCTTAACGGCGTATCCGGCCTAC‑AAGAGCGTGCAAATTCAATTCGTTG‑CAGA‑AG‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGTgc < 2:202789/96‑1 (MQ=12) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATc > 1:484109/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCa < 2:3456550/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CAGA‑GT‑T‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCa > 2:2963406/6‑100 (MQ=17) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:3412513/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑A‑TTCT‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAg > 1:252764/5‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CAGA‑AA‑C‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2978924/3‑100 (MQ=18) aTGACGGATAAGGCGTTCACGCCGCATCCGTCCTAC‑AAGTTCATGCAATTTTAATAAGTTGCCAGA‑TA‑T‑‑‑C‑CTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1527434/1‑100 (MQ=25) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1385350/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑GA‑ATCC‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:3628725/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑GA‑ATCC‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:1352664/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑GA‑AT‑C‑‑‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:864509/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CAGA‑AA‑C‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3237597/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CAGA‑GT‑T‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3904255/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CAGA‑GT‑T‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1436629/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑A‑AT‑TCAAC‑TTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:3585531/2‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAACATATTG‑CAAT‑TC‑T‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:776051/2‑98 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TGGG‑CT‑C‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4050688/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TGGG‑CT‑C‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1502194/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTG‑CAAG‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1881861/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAACTGTGCAAATTCAATATATTG‑CAGG‑AA‑A‑‑‑C‑ACGTAGGCCTGATAAGCGAAGCGCATCAGGCa > 1:1060097/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2650065/1‑100 (MQ=255) gCCGGATAAGGCGTTCGCGCCGCATCCGGCCTAC‑AAAAGTTTGCAAATTCAATAAATTG‑CAGA‑AT‑T‑‑‑C‑ATGTAGGCCTGATAAGCGAAGCGCATCAGGCAt > 2:4191360/1‑100 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTG‑CA‑A‑TA‑T‑‑‑G‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:1712766/1‑97 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑CAGAGAT‑T‑‑‑A‑T‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1199639/1‑99 (MQ=17) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:3690750/1‑98 (MQ=17) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CAGA‑AA‑C‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2446499/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TGGG‑CT‑C‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:254173/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑CAGT‑TT‑A‑‑‑T‑TGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:2244663/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CACC‑AT‑C‑‑‑C‑TCGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:914270/9‑98 (MQ=21) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 2:2502378/100‑1 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1329031/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:638783/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:4144737/1‑100 (MQ=255) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:3259963/100‑1 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CAGA‑AA‑C‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2346684/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CAGA‑AA‑C‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1209954/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CAGA‑GT‑T‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3983671/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CAGA‑GT‑T‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3278712/7‑100 (MQ=17) ggataaggcgTTCACGCCTTATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑CAGA‑GA‑T‑‑‑G‑GCGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:3540081/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CAGG‑AC‑C‑‑‑A‑T‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3879331/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CAGG‑AC‑C‑‑‑A‑T‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2400924/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TGGG‑CT‑C‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2149184/7‑100 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CATG‑AG‑C‑‑‑C‑ACGTAGGCCTGATAAGCGTAGCACATAAGGCAgttt > 1:745872/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑CAGT‑TT‑A‑‑‑T‑TGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:2568786/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CACC‑AT‑C‑‑‑C‑TCGTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:549514/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑CAGG‑AA‑C‑‑‑G‑ATGTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:1435705/7‑96 (MQ=25) gctaaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑GA‑ATCC‑‑‑C‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 1:2848181/6‑97 (MQ=21) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:116989/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTTGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:3771128/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2731698/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:3091136/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:810154/1‑100 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1620320/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:1805779/1‑100 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:3610401/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1332259/100‑1 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:3713940/100‑1 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:131155/1‑100 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑T‑‑‑T‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |