| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,706,017 | C→T | 32.8% | intergenic (‑227/+81) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,706,017 | 0 | C | T | 32.8% | 454.6 / 249.0 | 314 | intergenic (‑227/+81) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (92/101); new base T (90/3); total (210/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 | |||||||||||
Only 100 of 315 total aligned reads displayed.
GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACG > NC_000913/3705918‑3706113 | gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 2:180282/1‑100 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa > 1:479657/1‑100 (MQ=255) catccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 2:3993677/97‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑g > 1:2885079/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga‑a > 1:988076/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga‑a < 2:1346090/100‑1 (MQ=255) ggTATACAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga‑a > 1:2759421/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑c < 2:3732767/95‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCg < 2:4197409/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCg < 1:923343/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTg > 2:4065163/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGa > 1:3346544/1‑100 (MQ=255) aCAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGAt > 2:836076/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATa > 2:308829/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGc < 2:219682/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAg < 1:1347262/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc < 2:3966626/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAg < 1:1042068/99‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑CT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc > 2:1645393/1‑99 (MQ=255) tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCAt > 1:2389468/8‑100 (MQ=17) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCAt > 2:1606354/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑AT‑CC‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCa > 1:3675378/7‑100 (MQ=18) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCa > 2:2963406/6‑100 (MQ=17) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTG‑CA‑‑A‑TA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:1102970/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:3412513/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑‑A‑TTCT‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAg > 1:252764/5‑100 (MQ=18) gaaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTG‑CA‑AT‑CT‑T‑‑‑CTGGTAGGCCTGATAAGCATCGCGCATCAg > 1:2830811/5‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAgg < 2:2627754/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1979436/3‑100 (MQ=18) aTGACGGATAAGGCGTTCACGCCGCATCCGTCCTAC‑AAGTTCATGCAATTTTAATAAGTTGCCA‑GA‑TA‑T‑‑‑CCTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1527434/1‑100 (MQ=25) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa < 2:3006328/100‑1 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2714127/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3237597/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑T‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGct > 1:3112745/2‑99 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑T‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:776051/2‑98 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1502194/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4050688/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑CA‑AT‑CT‑C‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1888515/2‑100 (MQ=18) gcccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑CA‑GAGAT‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3893438/11‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAggaa > 2:2838325/1‑97 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2650065/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑CA‑GA‑AA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1816695/1‑99 (MQ=17) gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑CA‑GA‑AA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:4136408/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:326633/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑T‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:3868412/1‑98 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑CA‑‑A‑TTCT‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:1423190/1‑98 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑A‑AT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:2267381/1‑100 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTG‑CA‑‑A‑TA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:1712766/1‑97 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TG‑AG‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1309585/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2177069/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTG‑CA‑GG‑AA‑A‑‑‑CACGTAGGCCTGATAAGCGAAGCGCATCAGGCag > 2:3626007/1‑99 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2446499/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑CATGG‑GC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1072803/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:254173/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GG‑AG‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:2163276/9‑100 (MQ=21) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1190945/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:4144737/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 2:2502378/100‑1 (MQ=255) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑CA‑GAGAT‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 2:2109531/8‑97 (MQ=17) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:396157/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2346684/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3278712/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑A‑AT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:3842269/7‑97 (MQ=21) ggataaggcgTTCACGCCTTATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑CA‑GA‑GA‑T‑‑‑GGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:3540081/7‑100 (MQ=14) ggataaggcgTTCACGCCTTATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTG‑AT‑CG‑AT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:621797/7‑100 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3599403/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:860604/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1358885/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑C‑‑‑CTCGTAGGACTGATAAGCGTAGCGCATCAGGCAattc > 1:771647/7‑99 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GG‑AG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1468528/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GA‑GA‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1899437/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GG‑AG‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:935024/7‑98 (MQ=21) gataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 1:203771/6‑97 (MQ=21) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 2:3679299/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1589448/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTTGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:3771128/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:3476437/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:3591913/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1620320/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:1182755/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1706227/100‑1 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:3713940/100‑1 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:2655945/1‑100 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:2167757/1‑100 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:131155/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:738607/100‑1 (MQ=255) aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:2629059/100‑1 (MQ=255) ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa < 1:672771/100‑1 (MQ=255) gCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATgg > 1:3936350/1‑100 (MQ=255) ccTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc > 2:807629/1‑100 (MQ=255) cTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt > 2:3146875/1‑100 (MQ=255) tAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt > 2:1068362/1‑100 (MQ=255) aC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 2:3782099/100‑1 (MQ=255) c‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTTTTTTTTTTTTTAGTCTTGTATGGCtttt > 2:3354978/1‑100 (MQ=18) aaTCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:2605217/100‑1 (MQ=255) gTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt < 2:549819/100‑1 (MQ=255) gTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 1:496008/1‑100 (MQ=255) ccgatctCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:4070815/94‑1 (MQ=255) ttCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga < 1:2967100/100‑1 (MQ=255) aaTACATTG‑CA‑GA‑AT‑T‑‑‑TCCGTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGACTTTGCCATCAGTCACGTATGGCTTTTACTTAGTCGTTAGAGAc > 2:1139590/1‑100 (MQ=25) | GCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACG > NC_000913/3705918‑3706113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |