| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 78,830 | T→A | 17.8% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 78,830 | 0 | T | A | 17.8% | 494.5 / 97.0 | 214 | intergenic (+31/+18) | setA/leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| Reads supporting (aligned to +/- strand): ref base T (92/83); new base A (10/28); total (103/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.93e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.07e-01 | |||||||||||
Only 100 of 219 total aligned reads displayed.
GTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAG > NC_000913/78731‑78928 | tCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAtt < 1:251372/100‑1 (MQ=255) tACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAttt < 1:2860287/99‑1 (MQ=255) tACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTg < 1:2010838/100‑1 (MQ=255) tACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTg < 1:2056780/100‑1 (MQ=255) tACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTg < 1:1032263/100‑1 (MQ=255) aCTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGa > 1:3255728/1‑100 (MQ=255) aCTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGa > 2:1454087/1‑100 (MQ=255) cTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGAc > 2:1740661/1‑100 (MQ=255) tGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGAcc < 2:4063317/100‑1 (MQ=255) tGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGAcc < 2:3103276/100‑1 (MQ=255) gggTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCg > 1:3375003/1‑100 (MQ=255) gTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCggg < 1:2557872/100‑1 (MQ=255) gTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCggg < 2:1269110/100‑1 (MQ=255) gTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCggg < 2:3980856/100‑1 (MQ=255) tAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGc > 1:37207/1‑100 (MQ=255) tAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGc < 1:610619/100‑1 (MQ=255) tAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGc < 1:2809039/100‑1 (MQ=255) tAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGc < 1:2688263/100‑1 (MQ=255) tAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGc < 1:2088258/100‑1 (MQ=255) tAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGc < 2:387269/100‑1 (MQ=255) aaTTGCGGTTATTTCTGTTGTCGCG‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGct < 2:135956/100‑2 (MQ=255) aaTTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGct < 2:3585611/100‑2 (MQ=255) aTTGCGGTTATTTCTGTTGTCGCATTTTTTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCAAATGACCGGGct < 1:2791836/100‑2 (MQ=255) ttGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAg < 1:2623932/100‑1 (MQ=255) tGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAgg > 1:2894785/1‑100 (MQ=255) gCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAggg > 1:3173750/1‑100 (MQ=255) cGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCTCGGTCATTTGACCGGGCAAgggg > 2:383713/1‑100 (MQ=255) cGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAgggg < 2:295506/100‑1 (MQ=255) ggTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGa > 1:2385822/1‑100 (MQ=255) ttATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGAtt < 2:2773489/100‑1 (MQ=255) tttCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAAt < 2:2563288/100‑1 (MQ=255) tCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTc > 1:1520802/1‑100 (MQ=255) tCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTc > 1:1699372/1‑100 (MQ=255) cggttgtCGCA‑TTGTTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCa > 1:2850862/3‑100 (MQ=255) tgttgtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGaagatcggaa > 2:1609137/1‑91 (MQ=255) tgttgtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCAt > 2:481861/1‑100 (MQ=255) tgttgtCGCA‑TTATTTTTAACCGCAAAGGGTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCa < 1:1190501/99‑1 (MQ=255) gttgtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATa < 2:2860373/100‑1 (MQ=255) ttgtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATaa < 2:1330362/100‑1 (MQ=255) tgtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATaaa < 1:3703557/100‑1 (MQ=255) ntCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGAGCAAAGCCCGGTCATTTCACCGGGCAAGGGGATCAATTAATAAAc > 2:2676999/2‑100 (MQ=255) gtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAAc > 2:77931/1‑100 (MQ=255) gtCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAAc > 2:3709537/1‑100 (MQ=255) a‑ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAgg > 1:980832/1‑100 (MQ=255) a‑ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAgg > 1:1559756/1‑100 (MQ=255) a‑ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAAAGCAg > 2:2108335/1‑99 (MQ=255) ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGgt < 1:2321225/100‑1 (MQ=255) ttattTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGgt > 2:2380650/1‑100 (MQ=255) attTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGgttg > 1:1479293/1‑100 (MQ=255) tttttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGgttgt > 2:2281903/1‑100 (MQ=255) tttttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGgttgt > 1:2602119/1‑100 (MQ=255) tttAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGttt > 1:1616464/1‑100 (MQ=255) tAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTg > 1:3227607/1‑100 (MQ=255) aaCCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGc < 2:964438/100‑1 (MQ=255) aaCCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGc < 1:1879412/100‑1 (MQ=255) aaCCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGc < 1:2155217/100‑1 (MQ=255) aaCCGCAAAGGTTAAAGACGTTTGATGACGTGGACGAGAGCGGAAAGCCCGGTAATTTGACCGGGAAAGGGGAATAATTCATAAACGCAGGATGTTTTGc > 2:302539/1‑100 (MQ=255) aCCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCt < 1:1260388/100‑1 (MQ=255) aCCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCt < 2:1934984/100‑1 (MQ=255) ccGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCtt > 2:542304/1‑100 (MQ=255) ccGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCtt < 1:227070/100‑1 (MQ=255) cGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCtt > 2:2602886/1‑99 (MQ=255) cGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTc < 1:4166188/100‑1 (MQ=255) cGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTc < 2:2738058/100‑1 (MQ=255) cGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTc > 2:2062300/1‑100 (MQ=255) gCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCa > 1:501480/1‑100 (MQ=255) gCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCa < 1:3533445/100‑1 (MQ=255) ggTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGc > 2:167961/1‑100 (MQ=255) gTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCg > 2:3458052/1‑100 (MQ=255) ttAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTAATAAACGCAGGTTGTTTTGCTTCATAAGCg > 2:904779/1‑99 (MQ=255) tAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGc > 1:683387/1‑100 (MQ=255) gACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAAt > 2:1062759/1‑99 (MQ=255) gTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcg < 2:1172164/100‑1 (MQ=255) gTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcg < 1:3231693/100‑1 (MQ=255) tttGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgt < 1:784133/100‑1 (MQ=255) ttGCTGACGTGGACGATAGAGGCAAGCCCGGTCCTTTGACCGGGCAAGGGTATTAATTCATAGACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGcgtc < 2:3555957/100‑1 (MQ=255) cGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGtgc > 1:1564343/1‑100 (MQ=255) ggACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGtgctgc > 1:3634264/1‑100 (MQ=255) gATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAg < 2:324629/99‑1 (MQ=255) tAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTa < 1:224020/100‑1 (MQ=255) tccccttgCCCGGTCAAATGACCGGGCAAGGGAATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAg > 1:3977463/8‑100 (MQ=38) gCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTaa > 2:1957430/1‑99 (MQ=255) cGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTAATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGc < 1:2419755/100‑1 (MQ=255) ggAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGcc < 1:1370333/100‑1 (MQ=255) cccttgCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGcc > 1:2297977/6‑100 (MQ=255) ccttgCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGccc > 1:1419064/5‑100 (MQ=255) cttgCCCGGTCAAATGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCa > 2:2142958/4‑100 (MQ=255) tgCCCGGTCAAATGACCGGGCAAGGGGATTCATTCATCAACGCAGGTTGTTGTGCTTCATAAGCGACAATGGCGTTGTCGTGCTCCCAATTAAACCCaa > 2:2049592/2‑99 (MQ=255) aGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAAt > 1:3307929/1‑100 (MQ=255) aGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAAt < 2:1866368/100‑1 (MQ=255) gCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTGATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATa > 2:2521236/1‑100 (MQ=255) gCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATa > 2:105245/1‑100 (MQ=255) cccGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATAc < 1:891330/100‑1 (MQ=255) cccGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATAc > 2:2814515/1‑100 (MQ=255) cccGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATAc < 2:2192001/100‑1 (MQ=255) cccGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGATAAGCCCAATAc > 2:1843645/1‑100 (MQ=255) gTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTc > 1:902336/1‑100 (MQ=255) cATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCa > 2:1722798/1‑100 (MQ=255) aTTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAg < 2:771754/100‑1 (MQ=255) aTTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGATGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCa > 2:2234171/1‑99 (MQ=255) | GTCTACTGGGTAATTGCGGTTATTTCTGTTGTCGCA‑TTATTTTTAACCGCAAAGGTTAAAGACGTTTGATGACGTGGACGATAGCGGAAAGCCCGGTCATTTGACCGGGCAAGGGGATTAATTCATAAACGCAGGTTGTTTTGCTTCATAAGCGGCAATGGCGTCGTCGTGCTGCAAGGTAAGCCCAATACTGTCCAG > NC_000913/78731‑78928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |