| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 595,520 | T→A | 16.3% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 595,520 | 0 | T | A | 16.3% | 330.5 / 52.1 | 140 | intergenic (‑77/‑80) | cusR/cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| Reads supporting (aligned to +/- strand): ref base T (63/53); new base A (13/10); total (76/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.58e-01 | |||||||||||
Only 100 of 143 total aligned reads displayed.
CTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCT > NC_000913/595422‑595619 | cTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAttt < 1:166603/100‑1 (MQ=255) tCGACTATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAGTCGCTTATTGGCAAAATGACAATTTTg < 1:4064515/100‑1 (MQ=255) gACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTc > 1:3546452/1‑100 (MQ=255) gACAATCAACAGATTCATATTTCCTCCGCCTGTTGCTCGGGCAACTCTAGAGTAGCGGGAACCGATGGCAATCGCTTATTCCCCAACCGACAATTTTgcc > 2:1857223/1‑98 (MQ=255) cAATCAACAGTTTCATCTTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCa < 2:1484199/99‑1 (MQ=255) cAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCAt > 2:4130914/1‑100 (MQ=255) aaTCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCAtt > 2:1113343/1‑100 (MQ=255) aTCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGCTCAGATGGCAATCGCTTATTGGCCAAATGACAATTTTGTCAttt > 1:1737791/1‑100 (MQ=255) aTCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTAAttt > 1:851937/1‑100 (MQ=255) tCAACAGTTTCATAGTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttt < 2:1952881/99‑1 (MQ=255) cAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCAttttt > 2:412346/1‑100 (MQ=255) aaCAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTc > 1:1731204/1‑100 (MQ=255) aaCAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgc < 2:1198712/100‑3 (MQ=255) aaCAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgc < 2:2170128/100‑3 (MQ=255) aCAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCt > 2:164944/1‑100 (MQ=255) aCAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgcc < 2:36088/100‑4 (MQ=255) aCAGTTTCATATTGCCTCCGCATGTTGCCCGGGCAATTCTAGAATAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgcc < 2:3615929/100‑4 (MQ=255) cAGTTTCATATTTCCTCCGCATGTTGCCCTGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCt < 2:3021595/99‑1 (MQ=255) cAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTg < 2:3725432/100‑1 (MQ=255) cAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgcca < 2:3894754/100‑5 (MQ=39) aatttCATGTTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAtttt < 2:1990212/93‑1 (MQ=255) aGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGTCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTg < 1:3871027/99‑1 (MQ=255) ttCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGCTCAGATGGCCATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCa > 2:2182120/1‑99 (MQ=255) tcacatTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCAcn < 1:3189031/96‑2 (MQ=255) tCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTCTTGGCAGAATGACAATTTTGTCATTTTTCTGTCAc > 2:2529205/1‑99 (MQ=255) tCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCAcc < 1:2160864/100‑1 (MQ=255) cATATTTCCTCCGCATGTTGCCCGGGCAATTCTCTGGTTGCGGGATTAGATGGCAATCGCTTATTGGCAAAATGACGATTTTGTCATTTTGCTGTCACCg < 2:1743168/100‑1 (MQ=255) cATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGATTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgccaataagc < 2:1967579/100‑11 (MQ=37) cATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCg < 1:1208556/100‑1 (MQ=255) ttCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGaaaa > 1:1693512/1‑100 (MQ=255) ttCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGaaaa < 2:3724272/100‑1 (MQ=255) ttCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGaaa < 2:3206922/99‑1 (MQ=255) ncctccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAAt > 1:3047161/2‑100 (MQ=255) cctgcGCATGTTGCCCGGGATATTCTAGAGTAGC‑GGATCAGCTGGCAATCGCTTAGTGGCAAAACGACAATTTTGTCATTTTTCTGTCACCGGAAAATCa < 1:2351893/100‑1 (MQ=255) cctccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATc < 1:164944/100‑1 (MQ=255) cGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCaga > 2:2357077/1‑99 (MQ=255) cATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGcc < 1:2251335/100‑1 (MQ=255) tGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTg > 1:3450862/1‑100 (MQ=255) tGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTg < 1:334485/100‑1 (MQ=255) gTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTgg > 2:1083058/1‑100 (MQ=255) tGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTTACCGGAAAATCAGAGCCTGGCg > 2:1411096/1‑100 (MQ=255) tGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCg < 2:1847847/100‑1 (MQ=255) gCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGa < 1:3853814/100‑1 (MQ=255) gCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAg < 1:224348/100‑1 (MQ=255) cAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGt < 1:2233893/100‑1 (MQ=255) cAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGt > 2:2863872/1‑100 (MQ=255) tCTAGAGTAGCGGGATCAGATGGCTATCGCTTATTGGCAAAATGACAATTTTGTCAGTTGTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTggc < 2:1014859/100‑1 (MQ=255) cTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTggcg > 1:553515/1‑100 (MQ=255) agagTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTggcggc < 1:994175/100‑1 (MQ=255) gagTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCa < 1:4063640/100‑1 (MQ=255) gTAGCTGGATCAGATGGCGATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCa < 2:2493499/98‑1 (MQ=255) gTAGCGGGAGGAGATGGCAATCGCCTATTGGCAAAACGACAATTTTGTCAAGTTTATGTCACCGGAAAATCAGAACCTCGCGTGTAAAGTTGGCGGCAt > 2:73982/1‑99 (MQ=255) aGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATaaa > 1:3676803/1‑100 (MQ=255) gggATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAAt > 1:1903319/1‑99 (MQ=255) ggATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCa > 2:2804912/1‑100 (MQ=255) gATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCAc < 1:3064604/100‑1 (MQ=255) gATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCACAAAATCAc < 2:2855064/100‑1 (MQ=255) aTCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCAcc < 1:3746015/100‑1 (MQ=255) tCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCa > 1:3199579/1‑100 (MQ=255) aGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGa > 2:3137516/1‑100 (MQ=255) aGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGa < 2:1363135/100‑1 (MQ=255) aGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGa < 1:1968158/100‑1 (MQ=255) gATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGaa > 2:3908380/1‑100 (MQ=255) gATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGaa > 2:2583943/1‑100 (MQ=255) gATGGCAATCGCTTATTAGCAAAATGACAATTTAGTCATTTTTCTGTCACGGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCaatag > 2:275946/1‑94 (MQ=255) aTGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGaaa > 1:2580246/1‑100 (MQ=255) cAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTAt < 2:755083/100‑1 (MQ=255) cGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGc > 2:1487609/1‑100 (MQ=255) cGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGc > 1:3350248/1‑100 (MQ=255) gCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGcc < 2:2362790/100‑1 (MQ=255) gCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGcc > 2:1235029/1‑100 (MQ=255) gCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGcc > 1:350831/1‑100 (MQ=255) gtgacagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTa > 1:1091062/9‑100 (MQ=38) gacagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATg > 2:375722/7‑100 (MQ=38) gacagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATg > 1:2906664/7‑100 (MQ=38) ttGGCAAAATGACAATTTTGGCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGt > 2:2570808/1‑100 (MQ=255) acagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGATAATGGTGAGTAAAGTTGACGGCATAAAATCACCAGAAATTATGAGCCTATGt > 2:1863997/6‑100 (MQ=37) acagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGt > 2:3316921/6‑100 (MQ=39) tGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtc < 1:1306993/100‑1 (MQ=255) tGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtc < 1:3943781/100‑1 (MQ=255) cagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtc > 2:4165289/5‑100 (MQ=39) cagaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtc > 2:2127915/5‑100 (MQ=39) ggCAAAATGACAATTTTGTCATTTTTCTGGCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAGATCAACAGAAATTAGGAGCCTATGgct > 2:4115709/1‑100 (MQ=255) agaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtct > 2:3159077/4‑100 (MQ=255) gagaaaTGACAAAATTGTCATTTTTCTGTCAACTAAAAATATGAGCCTGTCTAGTAAATTTGGCGGCATAAAATAACCAGAAATAATGACCCTAtttatc > 2:2747440/4‑95 (MQ=255) gaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtctc > 1:2471749/3‑100 (MQ=255) gaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtctc > 1:2154262/3‑100 (MQ=255) gaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtctc > 1:4655/3‑100 (MQ=255) gCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtctc > 1:1466271/1‑100 (MQ=255) cAAAATGACAATTTTGTCATTTTTCTCTCACCGTAAAAGCAGATCCTGGCGAGGAAATTTGTCGTCATAAAATCACCAGAAATTATGAGCCTATGTCTcc > 2:345487/1‑100 (MQ=255) aaaaTGATTATTTTGACGGTTTTCTGTAACCGTAAAATAAGAGCCTGGGCAGTAAAGTTGGCCGCATATAATCACCAGAACTTATGAGCCTATGTCTCCt < 2:3886765/100‑1 (MQ=255) aaaTGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCtt > 1:2674152/1‑100 (MQ=255) aaTGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTg < 1:1508978/100‑1 (MQ=255) aaTGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTg < 1:3358759/100‑1 (MQ=255) gACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTaa < 1:3370103/100‑1 (MQ=255) gACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTaa < 2:3191412/100‑1 (MQ=255) cAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAAc > 2:3782881/1‑100 (MQ=255) cAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAAc > 2:1914080/1‑100 (MQ=255) aTTTTGTCATTTTTCTGTCACCGAAAAATCAGACTCTTTCCAGTAAAGTTGGGTTCATAAAATCACCACAAATTATGAGCCTCTGTTTCTTTGTaa < 2:1360180/96‑1 (MQ=255) tttGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCt > 2:3288585/1‑100 (MQ=255) | CTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCT > NC_000913/595422‑595619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |