New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1134649 =	93 (0.930)	5 (0.080) +TGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCT	4/118	10.8	8.3%	noncoding (64/98 nt)	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3984320	NA (NA)					noncoding (101/104 nt)	RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1134683‑1134649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGATGCTGACGCATCTTATCCAGCCTACA  <  NC_000913/3984320‑3984287                                    ||||||||||||||||||||||||||||||||||||||||                                   GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATC           >  2:1330452/1‑100      atctGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATCCAGCC      <  2:1182159/96‑1      ATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATCCAGCC      <  1:711146/100‑1       TGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATCCAGCCT     <  1:1330446/100‑1          GGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATGCGATGCTGACGCATCTTATCCAGCCagat  >  1:1182156/1‑96                                    ||||||||||||||||||||||||||||||||||||||||                                   GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1134683‑1134649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGATGCTGACGCATCTTATCCAGCCTACA  <  NC_000913/3984320‑3984287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.