BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3984320	NA (NA)	5 (0.080) +AGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCA	4/118	10.8	NA	noncoding (101/104 nt)	RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	4317965 =	NA (NA)	5 (0.080) +AGCCTACAGAACGCTGCAATTTATTGAATTTGCACGATCA	4/118	10.8	NA	noncoding (49/83 nt)	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 111 total aligned reads displayed.

CCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGG  >  NC_000913/3984221‑3984419

ccGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATcc                                                                                                     <  2:380654/100‑1 (MQ=255)

ccGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATcc                                                                                                     <  2:1157704/100‑1 (MQ=255)

   gATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGc                                                                                                  <  1:301397/100‑1 (MQ=255)

    aTGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCa                                                                                                 <  2:1073113/100‑1 (MQ=255)

        ggtgTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAgg                                                                                             >  1:2099457/4‑100 (MQ=255)

        ggcgTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAgg                                                                                             <  2:1382631/100‑1 (MQ=255)

        ggcgTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGAGTCAGCATCGCATCCGGCAAAgg                                                                                             >  2:558841/1‑100 (MQ=255)

          cgTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCa                                                                                           >  2:922951/1‑100 (MQ=255)

          cgTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCa                                                                                           >  1:139367/1‑100 (MQ=255)

          cgTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCa                                                                                           >  1:1185159/1‑100 (MQ=255)

            tAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGa                                                                                         >  1:185349/1‑100 (MQ=255)

              aaCGTCTTATCCGGCGTACATGATCGTGCAAATGCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGAtc                                                                                       <  1:671843/100‑1 (MQ=255)

              aaCGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGAtc                                                                                       <  1:1486632/100‑1 (MQ=255)

               aCGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGAtct                                                                                      <  2:2099469/100‑1 (MQ=255)

                cGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGAtctc                                                                                     >  2:812148/1‑100 (MQ=255)

                cGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGAtctc                                                                                     >  1:2092769/1‑100 (MQ=255)

                  ccTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAg                                                                                   >  1:2186598/1‑100 (MQ=255)

                   cTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGc                                                                                  <  1:2295705/100‑1 (MQ=255)

                    ttATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCg                                                                                 <  2:2071159/100‑1 (MQ=255)

                         cGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAgc                                                                            >  2:1789044/1‑100 (MQ=255)

                         cGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAgc                                                                            >  1:633067/1‑100 (MQ=255)

                         cGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAgc                                                                            <  2:2224132/100‑1 (MQ=255)

                          ggCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAgcg                                                                           >  1:1432440/1‑100 (MQ=255)

                          ggCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAgcg                                                                           >  1:2099289/1‑100 (MQ=255)

                           gCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAgcgc                                                                          <  2:1695511/100‑1 (MQ=255)

                            ccTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGcc                                                                         >  1:284582/1‑100 (MQ=255)

                               aCATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGc                                                                      >  1:241422/1‑100 (MQ=255)

                               aCATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGc                                                                      <  2:911669/100‑1 (MQ=255)

                               aCATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCGGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGc                                                                      <  1:1822175/100‑1 (MQ=255)

                                 aTGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCtt                                                                    <  1:132154/100‑1 (MQ=255)

                                  tGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTa                                                                   >  1:1041941/1‑100 (MQ=255)

                                  tGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTa                                                                   >  2:1270598/1‑100 (MQ=255)

                                  tGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTa                                                                   >  1:1724366/1‑100 (MQ=255)

                                  tGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTa                                                                   >  2:1955632/1‑100 (MQ=255)

                                  tGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTa                                                                   >  1:1721857/1‑100 (MQ=255)

                                   gATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAg                                                                  <  1:992864/100‑1 (MQ=255)

                                   gATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAg                                                                  >  1:752918/1‑100 (MQ=255)

                                     tCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTc                                                                <  2:1612963/100‑1 (MQ=255)

                                          cAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAg                                                              >  2:840242/1‑97 (MQ=255)

                                          cAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGAtt                                                           >  1:793791/1‑100 (MQ=255)

                                          cAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGAtt                                                           >  2:1757123/1‑100 (MQ=255)

                                           aaaTTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGAttt                                                          >  2:1692172/1‑100 (MQ=255)

                                            aaTTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTa                                                         <  1:1898652/100‑1 (MQ=255)

                                            aaTTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTa                                                         <  1:967317/100‑1 (MQ=255)

                                            aaTTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTa                                                         >  2:2324298/1‑100 (MQ=255)

                                             aTTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTaa                                                        <  2:752919/100‑1 (MQ=255)

                                               tCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATc                                                      <  2:1110206/100‑1 (MQ=255)

                                               ctaaTAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATc                                                      <  1:1690718/98‑1 (MQ=255)

                                               ctaaTAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATc                                                      <  1:1690390/98‑1 (MQ=255)

                                                cAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCt                                                     >  2:1937318/1‑100 (MQ=255)

                                                 aaTAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATcag                                                    >  2:1690400/1‑98 (MQ=255)

                                                 aaTAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATcag                                                    >  2:1690728/1‑98 (MQ=255)

                                                 aaTAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCtn                                                    <  2:1385442/100‑2 (MQ=255)

                                                 aaTAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTg                                                    >  1:1481675/1‑100 (MQ=255)

                                                         gCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCgtg                                            >  2:2221912/1‑100 (MQ=255)

                                                            gCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCgtggtg                                         <  2:1432446/100‑1 (MQ=255)

                                                             cGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGtggtgg                                        <  2:139367/100‑1 (MQ=255)

                                                              gTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGa                                       <  2:1041944/100‑1 (MQ=255)

                                                               ttCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGat                                      >  1:1082151/1‑100 (MQ=255)

                                                                    tAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATAtttt                                 <  2:656679/100‑1 (MQ=255)

                                                                      ggCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATAtttttt                               >  2:1418879/1‑100 (MQ=255)

                                                                       gCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTc                              >  2:1472345/1‑100 (MQ=255)

                                                                        cTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCa                             <  1:599649/100‑1 (MQ=255)

                                                                         tGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCa                             <  2:1481682/99‑1 (MQ=255)

                                                                         tGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAg                            >  1:2091587/1‑100 (MQ=255)

                                                                         tGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAg                            <  1:1467429/100‑1 (MQ=255)

                                                                         tGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAg                            >  1:1612942/1‑100 (MQ=255)

                                                                         tGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAg                            >  2:1141358/1‑100 (MQ=255)

                                                                          ggATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAgg                           >  2:625576/1‑100 (MQ=255)

                                                                          ggATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAgg                           <  2:2091599/100‑1 (MQ=255)

                                                                          ggATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAgg                           >  1:1727810/1‑100 (MQ=255)

                                                                           gATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGa                          <  1:574403/100‑1 (MQ=255)

                                                                           gATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGa                          >  1:1711423/1‑100 (MQ=255)

                                                                             tAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGAtc                        <  2:617522/100‑1 (MQ=255)

                                                                             tAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGAtc                        <  1:2324281/100‑1 (MQ=255)

                                                                             gatcttGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGAtc                        <  1:2477763/95‑1 (MQ=255)

                                                                               aGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGAtctc                      >  1:961020/1‑100 (MQ=255)

                                                                               aGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGAtctc                      >  2:1700245/1‑100 (MQ=255)

                                                                                gATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTcc                     >  2:845472/1‑100 (MQ=255)

                                                                                 aTGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCa                    <  1:1692162/100‑1 (MQ=255)

                                                                                 aTGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCa                    <  1:1141355/100‑1 (MQ=255)

                                                                                 aTGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCa                    >  1:2435595/1‑100 (MQ=255)

                                                                                  tGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGAtcagatc                   >  2:2477781/1‑95 (MQ=255)

                                                                                   gCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCata                  <  2:214481/100‑1 (MQ=255)

                                                                                    cGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCatat                 >  2:346164/1‑100 (MQ=255)

                                                                                      tCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATAc               >  1:1718708/1‑100 (MQ=255)

                                                                                       cAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATAcg              >  1:249175/1‑100 (MQ=255)

                                                                                         gcatcgcatcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATAcgcg            >  2:420351/1‑100 (MQ=255)

                                                                                           atcgcatcCGGCAAAGGCAGATCTGAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTg          <  2:2187462/100‑1 (MQ=255)

                                                                                            tcgcatcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGc         >  2:2503192/1‑100 (MQ=255)

                                                                                            tcgcatcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGc         <  2:1727820/100‑1 (MQ=255)

                                                                                            tcgcatcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGc         >  1:1935479/1‑100 (MQ=255)

                                                                                              gcatcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCAt       <  1:2221898/100‑1 (MQ=255)

                                                                                              gcatcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCAt       <  1:2221951/100‑1 (MQ=255)

                                                                                               catcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCAtt      >  2:2193959/1‑100 (MQ=255)

                                                                                               catcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCAtt      <  1:1937308/100‑1 (MQ=255)

                                                                                                 tcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTc    <  2:249174/100‑1 (MQ=255)

                                                                                                 tcCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTc    <  1:461769/100‑1 (MQ=255)

                                                                                                  ccGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCg   <  2:185349/100‑1 (MQ=255)

                                                                                                   cGGCAAAGCCAGATCTCAGCGATAGCGCCGGCTTAGTCAGTTTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCgg  <  2:1092449/100‑1 (MQ=255)

CCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAGGCAGATCTCAGCGATAGCGCCGGCTTAGTCAGATTTAATCTGCGCGCGTGGTGGATATTTTTTCAGGATCTCCATATACGCGTGCATTTCGG  >  NC_000913/3984221‑3984419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.