| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,706,048 | 0 | G | T | 20.6% | 413.8 / 80.0 | 145 | intergenic (‑258/+50) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (50/62); new base T (26/3); total (79/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.59e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 149 total aligned reads displayed.
TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCA > NC_000913/3705949‑3706147 | gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGa < 2:1399332/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgc > 1:1548441/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTCTCCGGCCTCC‑ACACTCGTGCACATTCAATACCTTGC‑‑CGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcc < 1:1516499/100‑2 (MQ=18) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:1496124/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:857314/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:1389301/100‑1 (MQ=255) gttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑AGG‑AAACAC‑‑GTAGGCCTGATAAGCGAAgcgc > 2:36760/10‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑A‑ATTCTCTTGTAGGCCTGATAAGCGTAGCGCAt > 1:696262/8‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:1250824/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:601201/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:1260334/6‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGT‑‑GGG‑CTCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:84719/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑ACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:554065/5‑100 (MQ=21) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTGCGGAGA‑AAAT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:237128/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1014964/96‑1 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGC‑‑AGG‑AAACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAgg > 2:2252467/4‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑AAT‑TCTCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2587882/3‑100 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:1043763/100‑1 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:206738/100‑1 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:35825/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:222259/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑AGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:909253/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑AGA‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:91724/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2370567/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑AGAGATTAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:780663/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑AGG‑AGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1004904/2‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGC‑‑AGA‑GATCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1074218/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGC‑‑AGG‑ATACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1329984/1‑99 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑AGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2022264/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑AGAGATTAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:921115/9‑98 (MQ=17) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTCC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1888592/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGC‑‑AAT‑CTTCTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 1:172919/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑AGG‑ACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1833796/7‑100 (MQ=18) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 2:2192839/100‑1 (MQ=255) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 1:63677/100‑1 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 1:1318353/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:2077154/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:2299948/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:1304350/1‑100 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:2500066/1‑100 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:962557/1‑100 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:60634/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1289556/100‑1 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAGATTGC‑‑AGA‑ATTTTC‑‑GTAGGTCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:1421164/99‑1 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:381922/1‑98 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:701754/1‑100 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:1110266/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 2:1797637/100‑1 (MQ=255) aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 2:1647992/100‑1 (MQ=255) aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 1:504469/100‑1 (MQ=255) tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt > 1:1313899/1‑100 (MQ=255) cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCTTGATAAGCGGACCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:2082327/1‑100 (MQ=255) cGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt < 2:2535110/100‑1 (MQ=255) cGGCCTAC‑AAAATCGTGCAAATTCAATACACTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt > 1:1029569/1‑100 (MQ=255) ggCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg > 1:1015666/1‑100 (MQ=255) ccTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc < 2:1017848/100‑1 (MQ=255) tAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt < 2:1533666/100‑1 (MQ=255) tAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt < 1:35825/100‑1 (MQ=255) tAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt < 1:2219870/100‑1 (MQ=255) c‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt < 1:745538/100‑1 (MQ=255) c‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt < 1:2314228/100‑1 (MQ=255) aaaaTCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt < 1:2367523/99‑1 (MQ=255) aaaaTCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTa < 1:701753/100‑1 (MQ=255) aaTCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:119674/100‑1 (MQ=255) aTCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatt > 2:2179354/1‑100 (MQ=255) cGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat > 2:329718/1‑100 (MQ=255) gTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 1:1344708/1‑100 (MQ=255) tGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 2:2252719/100‑1 (MQ=255) gCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg > 1:1477193/1‑100 (MQ=255) cAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa < 1:582777/100‑1 (MQ=255) tACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGt < 1:2526119/100‑1 (MQ=255) aCATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGtt > 2:163465/1‑100 (MQ=255) gC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 2:2100033/1‑100 (MQ=255) gC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 2:1411517/1‑100 (MQ=255) c‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGaa > 1:1780170/1‑100 (MQ=255) c‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGaa > 1:1932791/1‑100 (MQ=255) aGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCGTCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 1:658924/100‑1 (MQ=255) aGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 2:1318359/100‑1 (MQ=255) aGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 2:141127/100‑1 (MQ=255) gA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGt > 1:139445/1‑100 (MQ=255) gA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGt < 1:2179342/100‑1 (MQ=255) gA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGt < 1:1137849/100‑1 (MQ=255) aTTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGa > 1:215821/1‑100 (MQ=255) tC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGtt < 2:2500084/100‑1 (MQ=255) gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:338773/100‑1 (MQ=255) gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 2:561758/100‑1 (MQ=255) aGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGcc < 2:1676269/100‑1 (MQ=255) aGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGcc < 2:227853/100‑1 (MQ=255) aGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGcc > 1:1446085/1‑100 (MQ=255) ccTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTaa > 1:520535/1‑100 (MQ=255) ccTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTaa > 2:113633/1‑100 (MQ=255) cTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt < 2:2028229/100‑1 (MQ=255) gATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATgg > 2:787157/1‑100 (MQ=255) atctaGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATgg < 2:1687688/96‑1 (MQ=255) tAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTNCCTAATGGAt < 2:991653/100‑1 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGagat > 1:1687679/1‑97 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa < 1:1622014/100‑1 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa < 2:1971505/100‑1 (MQ=255) ggAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc < 1:1110263/100‑1 (MQ=255) gAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACca < 2:378713/100‑1 (MQ=255) | TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑AGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCA > NC_000913/3705949‑3706147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |