New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1113417 =	NA (NA)	6 (0.070) +GATTTTGCGTTTGTCATCAGACTT	5/150	11.9	NA	noncoding (1/98 nt)	RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 4470516	NA (NA)					intergenic (+195/+11)	mgtA/ridA	magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification
Rejected: Coverage evenness skew score above cutoff.

AAATCAATAAATTGCAGGAACGATGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1113469‑1113417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCCGGGCTATCATGCCCGGATTAAGTC  <  NC_000913/4470516‑4470488                                                      ||||||||||||||||||||||||                              aatTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGAT        <  2:755555/97‑1  atTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGATT       <  1:2164012/98‑1   tTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGATTA      <  1:1333191/99‑1   tTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGATT       <  1:745178/98‑1      AATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGATTAAGT   <  2:1251265/100‑1       ATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGATTAAGTC  <  1:571213/100‑1                                                      ||||||||||||||||||||||||                              AAATCAATAAATTGCAGGAACGATGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1113469‑1113417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCCGGGCTATCATGCCCGGATTAAGTC  <  NC_000913/4470516‑4470488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.