| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 226707 | 0 (0.000) | 33 (0.280) | 13/170 | NT | 100% | noncoding (949/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226725 | NA (NA) | noncoding (967/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
TCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGA > NC_000913/226608‑226806 | tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 2:2498587‑M1/1‑100 (MQ=255) ctcCGGGGGTAGAGCACTGTTTCGGCAAGTGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAAAGTTATCACGGGAGACACACG > 1:1731763‑M1/1‑99 (MQ=255) ctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGAGGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 2:432617‑M1/1‑99 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:2855‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 2:861892‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 2:1392899‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 2:1616867‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:758157‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:1312092‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCAGCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:3215727‑M1/100‑23 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgt < 1:141939‑M1/100‑24 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgt < 1:832171‑M1/100‑24 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:4290‑M1/99‑23 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 2:3108994‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:1824873‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 2:2114221‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:2798854‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:1948171‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:1949900‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC‑‑cggacgttagcacccgccgtgtgtct > 1:1065941‑M1/1‑74 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC‑‑cggacgttagcacccgccgtgtgtc < 1:1782084‑M1/99‑26 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCAAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 2:2292073‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGAGGCAAACTGCGAATACCGGAGAATGTTATCCCGGGAGACACACGacggacgttagcacccgccgtgtg < 2:1845577‑M1/100‑25 (MQ=255) ggCAAGGGGGTCACCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 2:504654‑M1/100‑25 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 2:786309‑M1/100‑26 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 1:1738873‑M1/100‑26 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 1:711384‑M1/100‑26 (MQ=255) cAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtc < 1:804650‑M1/100‑27 (MQ=255) aaGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtct < 1:2642684‑M1/100‑28 (MQ=255) gggggTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcc < 2:2237460‑M1/100‑30 (MQ=255) ggggTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctccn < 2:1206192‑M1/100‑31 (MQ=255) ggggTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctccc < 1:2379282‑M1/100‑31 (MQ=255) cATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtgat < 1:1453824‑M1/100‑36 (MQ=255) aTCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC‑‑cggacgttagcacccgccgtgtgtctcccgtgataaca < 2:1065939‑M1/100‑39 (MQ=255) ccggatgCAAACTGGGAATGCCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtat < 2:2990332‑M1/96‑51 (MQ=255) aCTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgc < 1:476542‑M1/100‑62 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:1240606‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:960880‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:2118673‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:2535354‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga < 1:2939162‑M1/100‑97 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:2695988‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:1578201‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:696820‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:535299‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:1493118‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga < 2:937877‑M1/100‑97 (MQ=255) acgacggacgttgccacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgtatcgggttggtaagtcgggatgacccccttgccgaa < 2:1896305‑M1/100‑98 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaa > 2:719855‑M1/1‑3 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaa > 2:1662468‑M1/1‑3 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaa < 2:1602139‑M1/100‑98 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaa < 2:1490099‑M1/100‑98 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaa > 2:3084970‑M1/1‑3 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaa < 2:2895029‑M1/100‑98 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttg > 2:3175291‑M1/1‑3 (MQ=255) acgacggacgttagcacccgccgtgtgtctcccgtgataacattctccgggattcgcaggtggcatcgggttggtaagtcgggatgacccccttgccgaa > 1:1786638‑M1/1‑3 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 2:2284572‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa < 2:2456267‑M1/100‑99 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 2:958238‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 1:116496‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 2:2600415‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 2:2856173‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 2:2040602‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa < 2:1635053‑M1/100‑99 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa < 1:24294‑M1/100‑99 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 1:542060‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 1:717948‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 1:856230‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa > 1:822355‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaa < 1:1903742‑M1/100‑99 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgagttggtaagtcgggatgacccccttgccgaaa > 1:2896309‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatccggttggtaagtcgggatgacccccttgccgaaa > 2:1893324‑M1/1‑2 (MQ=255) cgacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagttcgcatcgcgttggtaagtcgggatgacccccttgccgaaa > 2:2299722‑M1/1‑2 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaan < 2:819653‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac > 1:1942000‑M1/1‑1 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:1866582‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 2:7236‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:2282‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:186144‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:1497800‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac > 2:626740‑M1/1‑1 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:2474837‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac > 1:2580169‑M1/1‑1 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 2:429253‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac > 1:2593370‑M1/1‑1 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:303549‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:3204205‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 1:672587‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 2:2634271‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac > 1:81221‑M1/1‑1 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac > 2:1196883‑M1/1‑1 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 2:1313575‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccgaaac < 2:1769693‑M1/100‑100 (MQ=255) gacggacgttagcacccgccgtgggtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgcc < 2:3026583‑M1/95‑95 (MQ=255) | TCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGA > NC_000913/226608‑226806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |