New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3620569 =NA (NA)20 (0.180) 11/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

ATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATG  >  NC_000913/3620531‑3620659
                                      |                                                                                           
aTGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCC                               >  2:1006575‑M2/1‑100 (MQ=255)
 tgtgGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCT                              >  1:2099148‑M2/1‑100 (MQ=255)
  gtggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTG                             <  1:2574703‑M2/100‑1 (MQ=255)
   tggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGA                            >  1:1617364‑M2/1‑100 (MQ=255)
   tggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGA                            >  2:2705551‑M2/1‑100 (MQ=255)
   tggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGA                            <  1:495161‑M2/100‑1 (MQ=255)
   tggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTGACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGA                            <  2:2091652‑M2/100‑1 (MQ=255)
    ggtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGAC                           <  2:435728‑M2/100‑1 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                          <  2:968762‑M2/100‑1 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                          <  2:408428‑M2/100‑1 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                          <  2:3189379‑M2/100‑1 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                          >  1:1890890‑M2/1‑100 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                          >  1:1564347‑M2/1‑100 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACG                          <  1:15161‑M2/100‑1 (MQ=255)
     gtgACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTCTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGAC                           <  2:2698735‑M2/99‑1 (MQ=255)
          gggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaac                     >  1:272878‑M2/1‑95 (MQ=255)
          gggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaac                     >  1:2317213‑M2/1‑95 (MQ=255)
          gggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaac                     >  1:1190743‑M2/1‑95 (MQ=255)
           ggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaact                    >  2:2242522‑M2/1‑94 (MQ=255)
           ggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaact                    >  1:3272495‑M2/1‑94 (MQ=255)
           ggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaact                    >  1:607233‑M2/1‑94 (MQ=255)
           ggCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaact                    >  2:2532617‑M2/1‑94 (MQ=255)
              cTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaactggt                 >  1:1961141‑M2/1‑91 (MQ=255)
                catcaCGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaactggttg               >  1:1818243‑M2/1‑89 (MQ=255)
                            aaCCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGCCCGGTGGCTGACGttaactggttgtggtggttatag   >  1:2164060‑M2/1‑77 (MQ=255)
                              ccACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGTCCCGGTGGCTGACGttaactggttttggtggttatagt  >  2:2025778‑M2/1‑75 (MQ=255)
                                      |                                                                                           
ATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATG  >  NC_000913/3620531‑3620659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.