New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4037481	9 (0.070)	7 (0.060)	3/170	NT	44.9%	intergenic (+146/‑38)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA of rrnA operon
	?	NC_000913	= 4037511	NA (NA)					intergenic (+176/‑8)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA of rrnA operon

GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT  >  NC_000913/4037382‑4037580                                                                                                    |                                                                                                    ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     <  2:1099951‑M1/100‑1 (MQ=255) ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     >  2:411330‑M1/1‑100 (MQ=255) ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     >  2:1592606‑M1/1‑100 (MQ=255) ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     >  1:2681319‑M1/1‑100 (MQ=255) ggTTCACTGCGAAGTTTTGCTCTGTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC                                                                                                     <  2:1413687‑M1/100‑1 (MQ=255)  gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca                                                                                                    >  2:237756/1‑100 (MQ=11)  gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca                                                                                                    >  1:3105000/1‑100 (MQ=11)   ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                                                                   >  2:16091/1‑100 (MQ=31)     cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga                                                                                                 >  1:1709891/1‑100 (MQ=33)     cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga                                                                                                 >  1:619062/1‑100 (MQ=33)       cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg                                                                                               >  1:1555810/1‑100 (MQ=33)        tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                                                              <  1:1901846/100‑1 (MQ=33)         gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                             >  1:1192789/1‑100 (MQ=33)          cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg                                                                                            <  1:36039/100‑1 (MQ=33)          cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg                                                                                            >  2:1024317/1‑100 (MQ=32)           gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga                                                                                           >  1:2091725/1‑100 (MQ=35)            aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa                                                                                          <  1:89825/100‑1 (MQ=33)             aGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                                                                         >  1:3069901/1‑100 (MQ=32)             aGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                                                                         >  2:1854451/1‑100 (MQ=32)              tatttgcTCTTTAAAAATTTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGAGAGCCTATCAAATTTTCGCAACccga                                                                                                 >  2:3079322‑M1/3‑87 (MQ=255)                    ctctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcga                                                                                  >  2:1268840‑M1/1‑81 (MQ=255)                                    aTCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgc                                                                  <  1:301990‑M1/100‑36 (MQ=255)                                      cAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttcttgcgatccatcatcgtgttgcga                                                                <  1:3205538‑M1/100‑38 (MQ=255)                                       aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaa                                                               <  1:2878562‑M1/100‑39 (MQ=255)                                       aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACccgaagatgtttcttacaattcatcatcgtgttgcgaa                                                               <  2:1304844‑M1/100‑39 (MQ=255)                                         gCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgcgaaaa                                                             <  1:2320812‑M1/100‑41 (MQ=255)                                                                          ttCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttca                            <  1:1268843‑M1/100‑74 (MQ=255)                                                                                                 cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     <  1:702700‑M1/100‑97 (MQ=255)                                                                                                 cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  2:1158920‑M1/1‑4 (MQ=255)                                                                                                 cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     <  1:656207‑M1/100‑97 (MQ=255)                                                                                                 cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     <  1:475052‑M1/100‑97 (MQ=255)                                                                                                 cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     <  1:2107274‑M1/100‑97 (MQ=255)                                                                                                 cAACccgaagatgtttctttcgattcatcatcgtgttacgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc     >  2:1753566‑M1/1‑4 (MQ=255)                                                                                                  aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc    <  1:500436‑M1/100‑98 (MQ=255)                                                                                                  aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc    <  2:2366292‑M1/100‑98 (MQ=255)                                                                                                   ncccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca   >  1:1484326‑M1/2‑2 (MQ=255)                                                                                                   aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca   >  2:1411924‑M1/1‑2 (MQ=255)                                                                                                   aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca   >  2:628278‑M1/1‑2 (MQ=255)                                                                                                    cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  >  1:1126703‑M1/1‑1 (MQ=255)                                                                                                    cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  >  1:3112025‑M1/1‑1 (MQ=255)                                                                                                    cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  <  2:2415169‑M1/100‑100 (MQ=255)                                                                                                    cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  >  2:2936263‑M1/1‑1 (MQ=255)                                                                                                    cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  >  2:343082‑M1/1‑1 (MQ=255)                                                                                                    cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag  <  2:383663‑M1/100‑100 (MQ=255)                                                                                                    |                                                                                                    GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT  >  NC_000913/4037382‑4037580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.