New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1432761	NA (NA)	6 (0.050)	5/170	NT	NA	coding (351/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	= 1432785	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

TCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGA  >  NC_000913/1432711‑1432819                                                                           |                                   tcgacggctggggCGTTTCGGAAGTGGAAAGGAACAGAGGGGGGGGAGATGACGGAAGCAGAAAAACTGTTCCGCAACCGCAAGACGAAAAAAACaaaaa           >  2:2239640/10‑100 (MQ=0)   gCCGGAAGGAAAGTTACAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGAAAAAAAAAAAAAAAaac         <  2:1154333/100‑1 (MQ=1)          ggtgAGTTTCAGCAGTGGAACGGCACAGCCTGGGTGAATGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGTTGGAAGAAACAAAACACAACCTGa  <  2:1783595/97‑1 (MQ=1)                                                                           |                                   TCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGA  >  NC_000913/1432711‑1432819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.