New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3622174NA (NA)6 (0.050) 4/168 NT 100% coding (2983/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3622205 0 (0.000)coding (3014/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

AGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCTGGGACGGCGACCGGCTGACCACGATACA  >  NC_000913/3622106‑3622304
                                                                                                   |                                                                                                   
aGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGT                                                                                                     <  1:1003122‑M2/100‑1 (MQ=255)
aGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGT                                                                                                     <  2:2974469‑M2/100‑1 (MQ=255)
aGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGT                                                                                                     <  1:187420‑M2/100‑1 (MQ=255)
aGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGT                                                                                                     <  2:2433731‑M2/100‑1 (MQ=255)
aGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGT                                                                                                     <  1:2959152‑M2/100‑1 (MQ=255)
                           cacaATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTcgtaaagatagcgactttcgaccagcg                                                                          <  1:2816891‑M2/100‑28 (MQ=255)
                                                          cTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcac                                           <  2:1159856‑M2/100‑59 (MQ=255)
                                                          cTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTcgtaaagatagcgactttcgaccagcggctctgcatattgtgtccgcgtgtagtgcac                                           <  1:434668‑M2/100‑59 (MQ=255)
                                                                ttACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTcgtaaagatagcggctttcgaccagcggctctgcatattgtgtccgcgtgtagtgcaccagccg                                     <  1:2547125‑M2/100‑65 (MQ=255)
                                                                  aCGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggt                                   <  2:2084957‑M2/100‑67 (MQ=255)
                                                                    gACCCGCTGGGCCGCAGGGTGGCAAAACGGGTcgtaaagatagcgactttcgaccagcggcccttcatattgtgtccgcgtgtagtgcaccagccggtgc                                 <  1:145187‑M2/100‑69 (MQ=255)
                                                                                               cGGGTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtc      <  1:539389‑M2/100‑96 (MQ=255)
                                                                                               cGGGTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtc      >  1:1460367‑M2/1‑5 (MQ=255)
                                                                                                gggTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtcc     <  1:2841747‑M2/100‑97 (MQ=255)
                                                                                                 ggTcgtaaagatagcggctttcggccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgag        >  2:1659220‑M2/1‑3 (MQ=255)
                                                                                                  gTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgc   >  1:426497‑M2/1‑2 (MQ=255)
                                                                                                  gTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgc   >  1:2805345‑M2/1‑2 (MQ=255)
                                                                                                  gTcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtac     <  1:913463‑M2/98‑97 (MQ=255)
                                                                                                   tcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgct  >  1:629028‑M2/1‑1 (MQ=255)
                                                                                                   tcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgct  >  1:878878‑M2/1‑1 (MQ=255)
                                                                                                   tcgtaaagatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctgactgtcgtaatggtaccggtgagtccgct  >  2:748621‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGCACCGGCTGGTGCACTACACGCGGACACAATATGAAGAGCCGCTGGTCGAAAGTCGCTATCTTTACGACCCGCTGGGCCGCAGGGTGGCAAAACGGGTGTGGCGGCGTGAACGGGACCTGACGGGCTGGATGTCGCTGTCACGGAAACCGCAAGTGACCTGGTACGGCTGGGACGGCGACCGGCTGACCACGATACA  >  NC_000913/3622106‑3622304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.