New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4558313120 (0.990)5 (0.050) 5/154 NT 4.3% intergenic (‑24/+41) hypT/iadA hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase
?NC_000913 = 4558336 117 (1.120)intergenic (‑47/+18) hypT/iadA hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase
Rejected: Frequency below cutoff threshold.

Only 100 of 170 total aligned reads displayed.

TCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCAAT  >  NC_000913/4558237‑4558434
                                                                                                   |                                                                                                  
tCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTc                                                                                                    <  1:447870/100‑1 (MQ=255)
 cATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg                                                                                                   <  2:2679251‑M2/100‑2 (MQ=255)
  aTAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgg                                                                                                  >  2:3203902‑M2/1‑98 (MQ=255)
   tAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTATGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCggg                                                                                                 >  2:2360887‑M2/1‑97 (MQ=255)
    aaaGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTATGTCCATTCgggc                                                                                                <  2:1472376‑M2/100‑5 (MQ=255)
     aaGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTTTACGTCAATTCgggcg                                                                                               <  2:24354‑M2/100‑6 (MQ=255)
     aaGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg                                                                                               >  2:72309‑M2/1‑95 (MQ=255)
     aaGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg                                                                                               <  2:2500186‑M2/100‑6 (MQ=255)
       gCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc                                                                                             >  2:1536267‑M2/1‑93 (MQ=255)
       gCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc                                                                                             >  1:89948‑M2/1‑93 (MQ=255)
         cATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg                                                                                           >  1:788878‑M2/1‑91 (MQ=255)
         cATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg                                                                                           >  1:239929‑M2/1‑91 (MQ=255)
            ttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac                                                                                         >  1:818950‑M2/1‑88 (MQ=255)
            gtcaaagacggcaaagcctgcgtgaaaggaacgtttgaaacggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACa                                                                                        >  1:1530560‑M1/54‑100 (MQ=255)
               gTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAAcc                                                                                     <  1:2109310/100‑1 (MQ=255)
                tttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg                                                                                    <  2:3250250/100‑1 (MQ=255)
                  tCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGtt                                                                                  <  2:1244830/100‑1 (MQ=255)
                  tCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGtt                                                                                  <  2:2104904/100‑1 (MQ=255)
                   cAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt                                                                                 >  1:3254526/1‑100 (MQ=255)
                   cAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt                                                                                 >  1:2803067/1‑100 (MQ=255)
                    cggcaaagcctgcgtgaaaggaacgtttgaaacggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTa                                                                                >  1:1043178‑M1/46‑100 (MQ=255)
                    aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTa                                                                                >  1:1764181/1‑100 (MQ=255)
                    aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTa                                                                                <  2:313639/100‑1 (MQ=255)
                      tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg                                                                              <  1:1650708/100‑1 (MQ=255)
                      tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg                                                                              <  2:1187525/100‑1 (MQ=255)
                       attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGc                                                                             >  1:1826367/1‑100 (MQ=255)
                         tatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCg                                                                           >  2:457666/1‑100 (MQ=255)
                            gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGttt                                                                        >  2:551357/1‑100 (MQ=255)
                            gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGttt                                                                        <  1:1090447/100‑1 (MQ=255)
                             cAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc                                                                       <  1:376507/100‑1 (MQ=255)
                             cAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc                                                                       >  2:1924057/1‑100 (MQ=255)
                              aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa                                                                      >  2:1504742/1‑100 (MQ=255)
                                 aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAAc                                                                   <  1:2678747/100‑1 (MQ=255)
                                   cGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt                                                                 >  1:2114614/1‑100 (MQ=255)
                                   cGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt                                                                 <  1:2878403/100‑1 (MQ=255)
                                      accacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTcc                                                              <  2:702182/100‑1 (MQ=255)
                                       ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt                                                             >  2:2226475/1‑100 (MQ=255)
                                       ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt                                                             >  1:1970102/1‑100 (MQ=255)
                                       ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGAGGGCATTCTATGTCCCTTCGGGCGGCTGACAACCGTTTAAGCCGTTTAAAACGTTCCt                                                             <  1:1472380/100‑1 (MQ=255)
                                        cacaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt                                                            <  2:1310291/100‑1 (MQ=255)
                                        cacaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt                                                            <  2:2673538/100‑1 (MQ=255)
                                        cacaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt                                                            <  1:1621076/100‑1 (MQ=255)
                                          caGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCttgc                                                          >  1:1694116/1‑98 (MQ=255)
                                          caGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTc                                                          >  2:3024544/1‑100 (MQ=255)
                                          caGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTc                                                          <  2:322280/100‑1 (MQ=255)
                                           aGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCa                                                         <  1:157570/100‑1 (MQ=255)
                                           aGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCa                                                         <  1:3072657/100‑1 (MQ=255)
                                            gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAc                                                        <  1:2038422/100‑1 (MQ=255)
                                             tcattcatTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTACGCCGTTTCAAACGTTCCTTTCACg                                                       <  2:3104766/100‑1 (MQ=255)
                                             tCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACg                                                       <  2:1769011/100‑1 (MQ=255)
                                              cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGc                                                      >  2:950162/1‑100 (MQ=255)
                                                tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAg                                                    <  1:1400603/100‑1 (MQ=255)
                                                tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAg                                                    >  1:1868754/1‑100 (MQ=255)
                                                 ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAgg                                                   >  2:3157069/1‑100 (MQ=255)
                                                   aTTACGTTTTACTCTGTCAGCCGCCCTTGCTGGAATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTGCACGCAGGCt                                                 >  2:2156136/1‑100 (MQ=255)
                                                   aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCt                                                 >  1:2867901/1‑100 (MQ=255)
                                                    ttACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCtt                                                >  1:266817/1‑100 (MQ=255)
                                                     tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCttt                                               >  2:846967/1‑100 (MQ=255)
                                                     tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCttt                                               >  2:579930/1‑100 (MQ=255)
                                                       cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTgn                                             <  2:1713234/100‑2 (MQ=255)
                                                       cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGc                                             <  2:1853533/100‑1 (MQ=255)
                                                        gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGATAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGcc                                            <  1:1888540/100‑1 (MQ=255)
                                                        gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGcc                                            >  2:3156149/1‑100 (MQ=255)
                                                         ttttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCg                                           <  2:1696357/100‑1 (MQ=255)
                                                            tACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCt                                        <  1:512635/100‑1 (MQ=255)
                                                            tACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCt                                        <  1:2286690/100‑1 (MQ=255)
                                                            tACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCt                                        >  2:2552110/1‑100 (MQ=255)
                                                             aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt                                       >  1:1977551/1‑100 (MQ=255)
                                                             aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt                                       <  1:25209/100‑1 (MQ=255)
                                                              ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCttt                                      >  2:772700/1‑100 (MQ=255)
                                                                ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTTTTTGa                                    >  2:2957450/1‑100 (MQ=255)
                                                                ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGa                                    >  2:345425/1‑100 (MQ=255)
                                                                 tGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaaccaa                                   <  1:2757510‑M2/100‑66 (MQ=255)
                                                                 TGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGAc                                   <  1:2912672‑M1/100‑1 (MQ=255)
                                                                 TGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGAc                                   <  1:2461308‑M1/100‑1 (MQ=255)
                                                                  gTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaaccaaa                                  <  1:1404464‑M2/100‑67 (MQ=255)
                                                                   tCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaaccaaat                                 <  2:114999‑M2/100‑68 (MQ=255)
                                                                    cAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaatggatgactgtggtgcgattttgcataatattgaaaccaaatg                                <  2:1220250‑M2/100‑69 (MQ=255)
                                                                    CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCAt                                <  1:1579185‑M1/100‑1 (MQ=255)
                                                                    CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCAt                                <  2:1248669‑M1/100‑1 (MQ=255)
                                                                    CAGCCGCCCTTGCGGACATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCAt                                <  1:2358728‑M1/100‑1 (MQ=255)
                                                                     aGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgagagagtaaaacgtaatggatgactgtggcgcgattttgcataatattgaaaccaaatgg                               <  1:652408‑M2/100‑70 (MQ=255)
                                                                        CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGt                            <  1:1265960‑M1/100‑1 (MQ=255)
                                                                          CCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGttt                          <  1:1201399‑M1/100‑1 (MQ=255)
                                                                          CCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGttt                          >  1:2252016‑M1/1‑100 (MQ=255)
                                                                             ttGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGcc                       <  2:708923/100‑1 (MQ=255)
                                                                                cGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCcgcg                    >  1:3004719/1‑100 (MQ=255)
                                                                                  ggCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAg                  <  2:1365301/100‑1 (MQ=255)
                                                                                   gCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGc                 <  1:2444309/100‑1 (MQ=255)
                                                                                   gCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGc                 >  1:2658250/1‑100 (MQ=255)
                                                                                    cATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCg                <  1:1240737/100‑1 (MQ=255)
                                                                                           cGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCt         >  1:1544710/1‑100 (MQ=255)
                                                                                            gTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTg        >  1:2175158/1‑100 (MQ=255)
                                                                                            gTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTg        >  2:1178338/1‑100 (MQ=255)
                                                                                              ccATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCt      >  2:779386/1‑100 (MQ=255)
                                                                                               cATTCGGGCGGCTGACAACCGTTTAAGCCTTTTCAAACGTTCCTGTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTc     <  2:1968237/100‑1 (MQ=255)
                                                                                               cATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTc     >  2:443757/1‑100 (MQ=255)
                                                                                                aTTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCa    >  1:1034365/1‑100 (MQ=255)
                                                                                                aTTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCa    >  1:513640/1‑100 (MQ=255)
                                                                                                  tCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCAAt  <  2:3037509/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
TCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCATCAGTTTGCCGCGAGCGTATACCTGCTCAAT  >  NC_000913/4558237‑4558434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.