Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1520AG22.3% 190.4 / 22.2 103intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (57/23);  new base G (0/23);  total (57/46)
Fisher's exact test for biased strand distribution p-value = 1.54e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 104 total aligned reads displayed.

GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGA  >  NC_000913/3781053‑3781243
                                                                                                      |                                                                                            
gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGa                                                                                              >  2:2155367/1‑100 (MQ=255)
  gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAgg                                                                                            >  1:606835/1‑100 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAggg                                                                                           <  2:1897956/100‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAggg                                                                                           >  1:2394689/1‑100 (MQ=255)
    taccgatctgTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAgggg                                                                                          <  1:1854378/91‑1 (MQ=255)
         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAg                                                                                    <  2:311922/100‑1 (MQ=255)
          aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAgg                                                                                   >  2:737013/1‑100 (MQ=255)
           ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCTTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGc                                                                                  <  1:1838542/100‑1 (MQ=255)
           ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGc                                                                                  >  1:2125292/1‑100 (MQ=255)
            cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGcc                                                                                 >  2:2572595/1‑100 (MQ=255)
             gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑agatcggaa                                                                                >  2:1854385/1‑92 (MQ=255)
             gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCg                                                                                >  1:1566887/1‑100 (MQ=255)
                cGGCGCTGTATTTCCTCCCTCCCTCTGAACCCGCACCGCACTCTTTTTTTCCCCCCCGCCCCCCCGGGGAGG‑GGGCG‑GGGG‑TGAGGGG‑AAAAGGCCGCAc                                                                             <  1:2236472/100‑1 (MQ=255)
                 ggCGCTGTATGTCCTCCCTCACTCTGAAACGACACCGCACGTTTTTGTTCTCCCGCGCCCCCCCGGGGAGA‑GGGCC‑GGGG‑GGAGGGG‑AAAAGGCCGCAc                                                                             <  1:590949/99‑1 (MQ=255)
                 ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACt                                                                            >  2:1859341/1‑100 (MQ=255)
                 ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACt                                                                            >  2:1679615/1‑100 (MQ=255)
                 ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCGCGCCCCCCGGGGGAGA‑GGGCC‑GGGG‑GGGGGGG‑AAAAGGCCGCAc                                                                             <  1:84673/99‑1 (MQ=255)
                   cgcTGTTTGTCCCCCCCCCCCCTAAACCGACACGGCACTCTTTTTTTCTCCCGCCCCCCCCGGGGGGGG‑GGGGG‑GGGG‑GGGGGGA‑AAAAGGCCGc                                                                               <  1:2763618/95‑1 (MQ=255)
                    gcTGTTTGTCCTCCCTCGCTCTAACACGCCACCGCACTGTTTTTTTCTCCGTCGCCCCTCGGGGGGGG‑GGGCC‑GGGT‑TGAGGGA‑AAAAGGCCGCACTg                                                                           <  1:1729312/98‑1 (MQ=255)
                    gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑CAAAGGCCGCACTGCt                                                                         >  1:1075249/1‑100 (MQ=255)
                      tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCa                                                                       >  2:332057/1‑100 (MQ=255)
                      tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCa                                                                       >  2:148023/1‑100 (MQ=255)
                       gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCAc                                                                      >  1:87897/1‑100 (MQ=255)
                       gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCAc                                                                      >  2:1954866/1‑100 (MQ=255)
                        tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCAcc                                                                     >  2:3003868/1‑100 (MQ=255)
                        tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCAcc                                                                     >  2:2487276/1‑100 (MQ=255)
                          tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCaa                                                                   >  1:2811197/1‑100 (MQ=255)
                          tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCaa                                                                   >  2:112002/1‑100 (MQ=255)
                           gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAAt                                                                  >  1:37003/1‑100 (MQ=255)
                             aCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAAGGG‑AAAAGGCCGCACTGCTCACCAAttt                                                                >  1:2641137/1‑100 (MQ=255)
                              cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAAtttt                                                               >  2:1359547/1‑100 (MQ=255)
                                cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                             >  2:2542626/1‑100 (MQ=255)
                                 ccgttcgctGAAAGGACCCCCCCCTCTTTTTTCCCCCCCCCCCCCTCGGGGGAGG‑GGGCG‑GGGG‑GGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                             <  2:1496480/92‑1 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTg                                                            >  2:856582/1‑100 (MQ=255)
                                  cccACTCTGAAACGACCCCGCCCTCTTTTTTTCCCCCTCGCCCC‑CCGGGGGGG‑GGGCCGGGGG‑TGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           <  1:2487262/98‑1 (MQ=255)
                                  cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           >  2:1621210/1‑100 (MQ=255)
                                   tCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                          >  2:1508989/1‑100 (MQ=255)
                                    ccctcgaaaaCGACACCGCACTCTTTTTTTCCCCCTCGCCCC‑CCGGGGGGG‑GGGCCGGGGG‑TGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGc                                                           <  1:856579/91‑1 (MQ=255)
                                    cACTCTGAAACGACACCGCACTCTTTTTTTCTCTTTCTCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                                         >  1:743052/1‑100 (MQ=255)
                                     aCTCTGAAACGACACCGCACTCTTTTTTTCTCCTTCGTCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                        >  1:1789139/1‑100 (MQ=255)
                                       tctGACACGACACCGCACTCTTTTTTTCCCCCGCGCCCCCCCGGGGAGA‑GGCCC‑GGGG‑TGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                      <  1:2916240/100‑1 (MQ=255)
                                        ctGAGACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                     >  2:605432/1‑100 (MQ=255)
                                        ctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCtagatcgga                                                     >  1:1496475/1‑92 (MQ=255)
                                        ctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                     >  2:1998176/1‑100 (MQ=255)
                                        ctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                     >  2:1210382/1‑100 (MQ=255)
                                        ctGAAACGACACCACACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                     >  2:1158281/1‑100 (MQ=255)
                                         tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                    >  2:1234970/1‑100 (MQ=255)
                                          gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGGGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                   >  2:2788589/1‑100 (MQ=255)
                                           aaaCGCCCCCCCCCTCTTTTTTCCTCCCCCCCCCCTCGGGGGAGG‑GGGCG‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                      <  2:1723044/96‑1 (MQ=255)
                                           aaaCGCCACCGCCCTTTTTTTTCCCCCCTCGCCCCCCGGGGGAGA‑GGCCG‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                    <  1:1215788/98‑1 (MQ=37)
                                           aaaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc                                                  >  2:376574/1‑100 (MQ=255)
                                            aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                 >  1:1926968/1‑100 (MQ=255)
                                                 cccctctctctTTTTTTCCCCCTCGCCCCCCCGGGGAGG‑GGGGG‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                <  2:2566637/89‑1 (MQ=255)
                                                   ccGCACTCTTTTTTTCTCCCGCGCCCCCCCGGGGGGA‑GGCCC‑GGGG‑TGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc                                             <  1:1296994/97‑1 (MQ=255)
                                                    cccgctctTTTTTTCCCCCCCGCCCCCCCCGGGGGAGGGGCCGGGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                 <  2:743053/90‑1 (MQ=255)
                                                    cGCACTTTTTTTTTCTCCCTCCCCCCCCGGGGGAGA‑GGTCT‑GGGT‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                          <  1:605431/99‑1 (MQ=255)
                                                    cGCACTCTTTTTTTTTTTTTTTCCCCTCCGGGGAGA‑GGGCC‑GGGT‑TTAGCTT‑AATTGGCTGCACTGCTCACCATTTTTCTGCTATCTTGccccctctct                                          >  1:2575072/1‑94 (MQ=255)
                                                    cGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa                                         >  1:184875/1‑100 (MQ=255)
                                                     gCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCgagatcg                                        >  2:1194655/1‑94 (MQ=255)
                                                      cACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                       >  2:951885/1‑100 (MQ=255)
                                                      cACGCTTTTTTCCCCCCTCCCCCCT‑CGGGGAGA‑GGGCC‑GGGGTTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                              <  1:1194651/93‑1 (MQ=255)
                                                         tctTTTTTTCCCCCCCCCCCCTCCGGGGAGG‑GGGCC‑GGGG‑GGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                     <  2:3008661/99‑1 (MQ=255)
                                                         tcccgatccctcCCCCGCCCCCCGGGGGGGA‑GGCCG‑GGGG‑TGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                     <  1:2267209/90‑1 (MQ=255)
                                                          ttttttttCCCCCCCCCCCCCCCGGGGGGA‑GGGCC‑GGGG‑GGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                      <  1:973215/96‑1 (MQ=255)
                                                          ttttttctCGCCCCCGCCCCGCGGGGGGGG‑GGGGG‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                   <  2:2158221/99‑1 (MQ=255)
                                                           tttttttCCCCCGCGCCCCCCGGGGGAGG‑GGCCG‑GGGG‑TGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                     <  1:3003849/97‑1 (MQ=255)
                                                           tttttttCCCCCCCGCCCCCGGGGGGGGG‑GGGCG‑GGGG‑GGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                     <  1:2266081/97‑1 (MQ=255)
                                                           tttttttCCCCCCCGCCCCCCCGGGGAGA‑GGCCC‑GGGT‑TGAGGCG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                     <  1:1998169/97‑1 (MQ=255)
                                                           ttttttcCTCCCTCCCCCCTCGGGGGGGA‑GGGCC‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCAGCACTAAGGGGGc                                  <  2:351688/100‑1 (MQ=255)
                                                           ttttttcCCCCCCCCCCCCCCGGGGGGGG‑GGGCC‑GGGG‑GGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                   <  2:606836/99‑1 (MQ=255)
                                                             tttttCCCCCTCGCCCCTGTGGGGGGG‑GGGCG‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaan                                       <  2:706875/93‑2 (MQ=37)
                                                              ttttCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                               >  1:2599184/1‑100 (MQ=255)
                                                                ttCCCCCCCCCCCCCCGGGGGGGG‑GGGCC‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                             <  2:419293/100‑1 (MQ=255)
                                                                 tgccctccGCCCCTCGGGGGGGG‑GGGCG‑GGGG‑GGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                            <  2:2132945/93‑1 (MQ=255)
                                                                  ctcCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggagatcggaag                           >  2:2267218/1‑90 (MQ=255)
                                                                   tcCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                          >  1:162725/1‑100 (MQ=255)
                                                                    cccTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                         >  2:2773528/1‑100 (MQ=255)
                                                                     ccTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                        >  1:2515570/1‑100 (MQ=255)
                                                                     ccTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                        >  2:2906775/1‑100 (MQ=255)
                                                                      cTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGCCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                       >  1:1343331/1‑100 (MQ=255)
                                                                      cTCGCCCATCCTGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTGTCCTGCCCCCGCACTAAGGGGGCAgatcggaaga                       >  1:1613752/1‑91 (MQ=255)
                                                                          ccccTCGGGGGGGG‑GGGCC‑GGGG‑TTAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa                     <  1:639682/98‑1 (MQ=255)
                                                                            ccTCGGGGGAGA‑GGGCG‑GGGG‑TGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                 <  1:1859334/100‑1 (MQ=255)
                                                                            ccTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                 >  2:2720340/1‑100 (MQ=255)
                                                                               ccGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt              >  2:764755/1‑100 (MQ=255)
                                                                                cGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt             >  2:2034999/1‑100 (MQ=255)
                                                                                cGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt             >  2:1298062/1‑100 (MQ=255)
                                                                                  gggAGG‑GGGCG‑GGGG‑GGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa           <  2:149909/100‑1 (MQ=255)
                                                                                  gggAGC‑GGCCC‑GGGG‑TGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt             <  1:1860299/98‑1 (MQ=255)
                                                                                   gggga‑gGGCG‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc          <  1:1158277/97‑1 (MQ=255)
                                                                                    tccgatctcc‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc          <  2:141275/92‑1 (MQ=255)
                                                                                         gggCG‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     <  1:2773512/100‑1 (MQ=255)
                                                                                         gggCG‑GGGG‑GGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     <  2:2811214/100‑1 (MQ=255)
                                                                                         gggCC‑GGGG‑‑GAGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     <  1:894018/100‑1 (MQ=255)
                                                                                          ggccggggg‑TTAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     <  1:2009355/95‑1 (MQ=255)
                                                                                          ggccggggg‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc     <  1:1234966/95‑1 (MQ=255)
                                                                                          ggCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCa    >  1:1610511/1‑100 (MQ=255)
                                                                                            cc‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAcagatcgga  >  1:141275/1‑92 (MQ=255)
                                                                                            cc‑GGGG‑AGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa  >  2:288004/1‑100 (MQ=255)
                                                                                               gggg‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg   <  1:1399721/97‑1 (MQ=255)
                                                                                                      |                                                                                            
GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGA‑GGGCC‑GGGG‑TGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGA  >  NC_000913/3781053‑3781243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑