New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4386067	NA (NA)	3 (0.030)	3/166	NT	NA	coding (3304/3324 nt)	mscM	mechanosensitive channel protein, miniconductance
	?	NC_000913	= 4386082	NA (NA)					coding (3289/3324 nt)	mscM	mechanosensitive channel protein, miniconductance

CTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4385963‑4386067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacgTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCC  <  NC_000913/4386082‑4385984                                                                                                                                                                                                              CTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCC                                                                                                          >  1:1649009/1‑100  TATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCT                                                                                                         >  2:387602/1‑100  TATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCT                                                                                                         >  2:2143044/1‑100   atgTTCTGCTACTGGCTGTTGCAGTTTTTTCTGCGCTATCAGTTGTGGTTGTGAGCCGGAGTGGTTCATCCGGCACACAAACTTACAAACTCCCCGCCTG                                                                                                        <  1:1993933/97‑1   ATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTG                                                                                                        <  1:1635816/100‑1    TTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGA                                                                                                       >  1:1160621/1‑100      TTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACG                                                                                                     <  1:2806406/100‑1      TTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACG                                                                                                     <  2:1473648/100‑1                               TTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACGTCTGCGGGCAAAGGTCGTCAGGCGG                                                                            <  1:1264421/100‑1                                 CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACGTCTGCGGGCAAAGGTCGTCAGGCGGGA                                                                          <  1:252276/100‑1                                          CAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAA                                                                 <  1:155362/100‑1                                                                                                    CTGACGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAA       >  1:3263357/1‑100                                                                                                    CTGACGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAA       >  2:2338185/1‑100                                                                                                    CTGACGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGACGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAA       >  1:2135040/1‑100                                                                                                     TGACGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAAC      <  2:2066148/100‑1                                                                                                      GACGTCTGCGGGCAAGGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACT     >  1:1946553/1‑100                                                                                                       ACGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTG    <  2:708540/100‑1                                                                                                        CGTCTGCGGGCAAAGGTCGTCAGGCGGGAGGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGC   >  1:758851/1‑100                                                                                                        CGTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGC   <  2:3140090/100‑1                                                                                                         GTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCC  <  1:906433/100‑1                                                                                                                                                                                                              CTATTTTCGGCTACTGGCTGTGGCAGTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4385963‑4386067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacgTCTGCGGGCAAAGGTCGTCAGGCGGGAAGTTTGTAAGTTTGTGTGCCGGATGAACCAATCCGGCTCACAAACAAAACTGATAGCGCAGAAAAAACTGCC  <  NC_000913/4386082‑4385984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.