New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	792268 =	NA (NA)	4 (0.040)	4/164	NT	NA	noncoding (5/34 nt)	REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	792298 =	NA (NA)					intergenic (‑243/+18)	galE/modF	UDP‑galactose‑4‑epimerase/molybdate ABC transporter ATPase

TCTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/792373‑792268 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCGC  >  NC_000913/792298‑792396                                                                                                                                                                                                               TCTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTC                                                                                                           >  2:333949/1‑100  CTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCT                                                                                                          >  1:1752000/1‑100  CTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCT                                                                                                          >  1:2399011/1‑100    TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCC                                                                                                        <  2:2611984/100‑1      AGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG                                                                                                      <  1:929340/100‑1      AGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG                                                                                                      <  2:880502/100‑1      AGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG                                                                                                      <  1:2126200/100‑1       GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC                                                                                                     >  2:1340787/1‑100       GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC                                                                                                     >  2:2779515/1‑100       GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC                                                                                                     <  1:150480/100‑1                                                                   TGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTC                                         >  2:342742/1‑100                                                                       GACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGC                                     >  2:2682610/1‑100                                                                         CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC                                   >  2:405018/1‑100                                                                             GCCGGAGGCGGCCTTAGCACCCTCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGA                                 >  1:2308107/1‑98                                                                                                    CTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGC        <  1:669181/100‑1                                                                                                     TCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCA       <  1:1146976/100‑1                                                                                                     TCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCATCCGGCACGAACTCAAGACGATGGGTAATACAGGCA       >  1:770703/1‑100                                                                                                      CCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAG      >  2:3277619/1‑100                                                                                                      CCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGACCGGCACGAACTCAAGACGATGGGTAATACAGGC        <  1:673132/98‑1                                                                                                          CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCGC  >  1:3210250/1‑100                                                                                                          CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCGC  <  2:2958135/100‑1                                                                                                                                                                                                               TCTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/792373‑792268 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggcAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCGC  >  NC_000913/792298‑792396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.