| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2133431 | NA (NA) | 6 (0.050) | 4/164 | NT | NA | intergenic (‑34/+59) | wcaA/wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| ? | NC_000913 | = 2133461 | NA (NA) | noncoding (30/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2133335‑2133431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG < NC_000913/2133461‑2133357 AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCC < 1:1282496/100‑1AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCC < 2:183585/100‑1AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCC < 2:1620774/100‑1 CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGA < 2:1489516/100‑1 CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGG < 2:147373/99‑1 GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT > 2:1548643/1‑100 GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 2:3196193/100‑1 GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 1:1675754/100‑1 GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 1:46891/100‑1 CATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAG < 1:1691180/100‑1 CATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAG < 2:3350571/100‑1 TCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAA > 1:1548637/1‑100 TGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCC > 2:1917875/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG > 1:908682/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG < 2:156920/100‑1 GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG < 1:1807907/100‑1 GCCGAATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG > 2:2663862/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC < 2:1504201/100‑1 GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC < 1:2949928/100‑1 GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC < 2:183467/100‑1 GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC < 2:3252178/100‑1 GATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCT < 2:3313991/100‑1 ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG < 2:526000/100‑1 ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG < 1:1772559/100‑1 ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCT < 2:1548600/99‑1 ATAAGGCGTTCACGCCGCATCCGGAAAGCAAACCAGCTCATAAGCCGGGAGAAAAAAAAAAAAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG < 1:1587660/100‑1 AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2133335‑2133431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG < NC_000913/2133461‑2133357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |