| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3203112 = | NA (NA) | 8 (0.070) | 6/164 | NT | NA | coding (1222/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| ? | NC_000913 | 3203140 = | NA (NA) | intergenic (+11/+170) | cca/bacA | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase | |||||
CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3203216‑3203112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggcaTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG > NC_000913/3203140‑3203238 CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTT > 2:2781657/1‑100CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTT > 2:1986949/1‑100CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCACATCCGGCAAAATGCCCAATACTCATTCAGGCTTT > 2:1669133/1‑100 GCTTGCGTGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTG < 1:2024127/100‑1 GCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTG < 2:1364178/100‑1 CTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGG > 2:793990/1‑100 CTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGG < 2:1709124/100‑1 CTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGG < 2:2001529/100‑1 TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG < 2:1872060/100‑1 TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG < 2:2695298/100‑1 TGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGC < 1:1596777/100‑1 GCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACA > 2:1040818/1‑100 CCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGG > 2:2431138/1‑100 GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAA > 1:3156796/1‑100 GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAA > 2:2418581/1‑100 GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATAA > 1:1446022/1‑100 GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG > 1:2757206/1‑100 AAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGAC > 1:2266575/1‑100 AATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGC > 2:1236297/1‑100 TTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGA > 2:1617193/1‑100 TTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGA > 2:1963405/1‑100 TGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGAT > 2:738303/1‑100 GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT > 1:81407/1‑100 GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT > 1:2945253/1‑100 GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT > 2:6578/1‑100 GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG > 1:1027461/1‑100 GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG > 2:2053779/1‑100 GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG > 1:2282819/1‑100 CATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCC > 1:2937979/1‑100 CATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCC < 1:159061/100‑1 CATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCC > 2:896666/1‑100 ATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG < 1:353058/100‑1 CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3203216‑3203112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggcaTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG > NC_000913/3203140‑3203238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |