| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3220880 = | NA (NA) | 10 (0.090) | 7/154 | NT | NA | noncoding (1/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3220911 = | NA (NA) | intergenic (+38/+4) | patA/ygjH | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent/putative tRNA binding protein; putative tRNA corner chaperone | |||||
GGAAACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3220990‑3220880‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccatccgatCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATT > NC_000913/3220911‑3221009 GGAAACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTAT > 1:1328240/1‑100GGAAACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTAT > 1:1331586/1‑100 AAACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCG < 2:2430863/100‑1 AACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGC > 2:1612424/1‑100 AACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGC < 1:947983/100‑1 ACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCC < 2:695383/100‑1 CGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCAT > 1:1503778/1‑100 GATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATC > 2:745274/1‑100 ATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATCC < 2:1747069/100‑1 ATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATCC < 2:1797102/100‑1 TGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATCCG < 2:1520387/100‑1 TGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCGATACGACG‑‑TCGCCATCCGATCTTTTTA < 1:3066657/100‑1 CGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCGATACGACG‑‑TCGCCATCCGATCTTTTTATACGAC < 1:3296707/100‑1 GGCGTACGCGTCGTATAAAAAGATCGGATGGCGATACGACG‑‑TCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTT < 2:14408/100‑1 ATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATCCGATTTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTC > 2:2904041/1‑100 TCGGATGGCG‑‑ACGTCGTATCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCC > 2:2007393/1‑97 CGGATGGCG‑‑ACGTCGTATCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCA > 1:74404/1‑100 CGGATGGCG‑‑ACGTCGTATCGCCATCCGATCTTTTTATACGACGCATACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCA > 2:1372109/1‑100 GGATGGCG‑‑ACGTCGTATCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCAT > 2:1453709/1‑100 GGATGGCG‑‑ACGTCGTATCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCAT > 1:1062371/1‑100 GGATGGCG‑‑ACGTCGTATCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCAT > 2:1651298/1‑100 TCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAA > 2:441320/1‑100 CGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAAC > 2:1510281/1‑100 GCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACA > 1:559961/1‑100 CATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGC > 2:2575056/1‑100 ATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCA > 2:1895084/1‑100 ATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCA < 2:2875303/100‑1 TCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCAT < 1:1200198/100‑1 CCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTTCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATG > 1:2743461/1‑100 CCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATG > 1:322711/1‑100 CGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGC > 2:1706885/1‑100 CGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGC > 2:2951964/1‑100 GATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCA < 2:1075971/100‑1 GATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCA > 2:2201124/1‑100 GATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCA > 2:2855101/1‑100 GATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGC > 1:2939220/1‑99 TCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATT > 1:929918/1‑100 GGAAACCGATGACGGCAGTGAAAGCGTGCTGTTAACGCCGGAGCGGATGATGCCTGCGGGCGTACGCGTCGTATAAAAAGATCGGATGGCG‑‑ACGTCGTATCGCCATCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3220990‑3220880‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccatccgatCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATT > NC_000913/3220911‑3221009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |