New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3231252 =	NA (NA)	8 (0.070)	6/164	NT	NA	noncoding (1/283 nt)	REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913	3231282 =	NA (NA)					noncoding (31/283 nt)	REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3231357‑3231252 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  NC_000913/3231282‑3231381                                                                                                                                                                                                                TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCA                                                                                                            <  2:2884800/100‑1  CCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCAT                                                                                                           >  2:1716162/1‑100   CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                          >  2:935057/1‑100   CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                          <  2:648829/100‑1   CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                          >  2:2887113/1‑100   CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                          >  1:3085527/1‑100   CGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATC                                                                                                          >  2:1715160/1‑100    GCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCC                                                                                                         >  1:2092835/1‑100    GCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCC                                                                                                         >  1:2093175/1‑100      CAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCG                                                                                                        >  2:257698/1‑99       AGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                      <  2:999732/100‑1       AGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                      <  2:850533/100‑1       AGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                      <  2:1121190/100‑1       AGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                      <  1:986020/100‑1        GTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC                                                                                                      >  1:1273674/1‑99         TGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCn                                                                                                      <  1:808654/98‑2                                                                          TAGGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCC                                   >  2:3318737/1‑100                                                                            GGGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCAC                                 >  2:285004/1‑100                                                                             GGCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACT                                >  1:1026123/1‑100                                                                              GCGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTG                               >  2:2911725/1‑100                                                                               CGGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGG                              >  2:1939782/1‑100                                                                                GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCGATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                             >  1:1792515/1‑100                                                                                GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                             >  2:2743721/1‑100                                                                                GGATAAGGCGTTTACGCCGCATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGC                             >  1:1666403/1‑100                                                                                                     TCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTA        >  2:283863/1‑100                                                                                                     TCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTA        >  1:1668893/1‑100                                                                                                      CCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTAT       >  1:625789/1‑100                                                                                                      CCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTAT       >  1:1302686/1‑100                                                                                                       CGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATC      >  2:2301440/1‑100                                                                                                       CGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATC      >  1:2778108/1‑100                                                                                                         CCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCG    <  1:2112742/100‑1                                                                                                         CCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCG    >  2:12319/1‑100                                                                                                          CCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC   <  2:1353284/100‑1                                                                                                          CCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGC   >  2:1043514/1‑100                                                                                                          CCTACATGTGCAATCCTCCTGGCC‑GATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  1:3073424/1‑100                                                                                                                                                                                                                TCCGCCAGTGGCGCGGTGCAGTTGCCGGATGCAACGCTTGCCGCGTTTTATCCGGCCAGGAGGATTGCACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3231357‑3231252 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  NC_000913/3231282‑3231381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.