| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168341 | 13 (0.110) | 14 (0.130) | 10/158 | NT | 54.9% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | NA (NA) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
GATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG > NC_000913/4168242‑4168440 | gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT > 1:3201975‑M1/1‑100 (MQ=255)gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT > 2:2604079‑M1/1‑100 (MQ=255) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAatat > 1:1720926/1‑100 (MQ=38) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa > 1:2193946/1‑100 (MQ=33) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa > 1:2163549/1‑100 (MQ=35) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa > 1:1666611/1‑100 (MQ=35) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa > 1:2107498/1‑100 (MQ=35) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCAc < 1:2899903/100‑1 (MQ=33) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCAc > 1:2295124/1‑100 (MQ=33) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCAc < 1:2263417/100‑1 (MQ=33) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCAc > 1:2162797/1‑100 (MQ=32) aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACg > 1:1969028/1‑100 (MQ=33) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCa > 1:2517049/1‑100 (MQ=32) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCa > 1:1523977/1‑100 (MQ=32) tGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCaa > 2:1632113/1‑100 (MQ=32) tGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCaa > 1:1173685/1‑100 (MQ=32) ggaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc > 2:2262674/3‑100 (MQ=14) gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc > 1:3073409/1‑100 (MQ=32) gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc > 2:1735477/1‑100 (MQ=32) gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc > 2:1869017/1‑100 (MQ=32) aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcg > 2:630860/1‑100 (MQ=32) aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgc > 1:1637213/1‑100 (MQ=31) aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCAGTTCGCTTTCTATTAATGAAAGCCCACCCTACACGAAAAGATCAAGCAAcgc > 2:1563141/1‑100 (MQ=11) ggCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatat < 2:2740980‑M1/100‑20 (MQ=255) gTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatatttt < 2:2113583‑M1/100‑23 (MQ=255) ttACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCTCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattttcg < 2:139675‑M1/100‑25 (MQ=255) ttACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattttcg < 1:1384551‑M1/100‑25 (MQ=255) ttACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattttcg < 2:749198‑M1/100‑25 (MQ=255) ttGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtg < 2:2283492‑M1/100‑32 (MQ=255) ttGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtg < 1:2390674‑M1/100‑32 (MQ=255) gggAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgta < 1:2652202‑M1/100‑34 (MQ=255) ggAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtag < 2:2557367‑M1/100‑35 (MQ=255) aGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtaggg < 1:2636533‑M1/100‑37 (MQ=255) aGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCGACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtaggg < 2:3100520‑M1/100‑37 (MQ=255) aGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgag < 2:237784‑M1/100‑41 (MQ=255) tGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCGACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagcttt < 2:2221546‑M1/100‑45 (MQ=255) gAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttc < 2:1136394‑M1/100‑46 (MQ=255) taagaaGGCCGGGCGCTGGCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGcc < 2:614757/96‑1 (MQ=1) acacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccca < 2:1001357‑M1/100‑91 (MQ=255) acacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccca < 2:248006‑M1/100‑91 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 2:1905656‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 2:2570815‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 2:2584999‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 2:897103‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa < 1:1592014‑M1/100‑92 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 1:2918625‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 1:3140361‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccca > 2:651844‑M1/1‑9 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaac > 1:182973‑M1/1‑8 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaac > 2:3073436‑M1/1‑8 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaac > 1:760116‑M1/1‑8 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaac > 2:1405990‑M1/1‑8 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg > 1:3279447‑M1/1‑7 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg < 1:397820‑M1/100‑94 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg < 1:2639450‑M1/100‑94 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg > 1:2140797‑M1/1‑7 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg > 2:550077‑M1/1‑7 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccgtattctcttcagcctcactcccaacg > 1:615958‑M1/1‑7 (MQ=255) gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc > 1:1571172‑M1/1‑6 (MQ=255) gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc > 2:2496061‑M1/1‑6 (MQ=255) gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc > 1:2869898‑M1/1‑6 (MQ=255) gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc < 2:2878316‑M1/100‑95 (MQ=255) aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg < 1:2880205‑M1/100‑96 (MQ=255) aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg < 2:1109894‑M1/100‑96 (MQ=255) aaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgta < 1:1566988‑M1/100‑98 (MQ=255) aaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgta < 2:2778807‑M1/100‑98 (MQ=255) aaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgta < 2:2641317‑M1/100‑98 (MQ=255) aaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgta < 2:2066641‑M1/100‑98 (MQ=255) ttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaa < 1:3189821‑M1/100‑100 (MQ=255) | GATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG > NC_000913/4168242‑4168440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |