New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4285342NA (NA)7 (0.060) 5/164 NT NA noncoding (41/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4285374 NA (NA)noncoding (73/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 182 total aligned reads displayed.

GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTC  >  NC_000913/4285244‑4285440
                                                                                                  |                                                                                                  
gTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATg                                                                                                   <  2:1543331‑M1/100‑2 (MQ=255)
 ttttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgc                                                                                                  >  2:201287‑M1/1‑98 (MQ=255)
  tttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcc                                                                                                 >  1:2229649‑M1/1‑97 (MQ=255)
   ttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcct                                                                                                <  2:939071‑M1/100‑5 (MQ=255)
    tAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctg                                                                                               <  2:1317932‑M1/100‑6 (MQ=255)
     ttaaccttctcccataaGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctga                                                                                              >  2:1381020‑M1/9‑94 (MQ=255)
     aaTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctga                                                                                              <  2:2724497‑M1/100‑7 (MQ=255)
     aaTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctga                                                                                              >  1:614155‑M1/1‑94 (MQ=255)
      aTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGTCGGATAAGGCATTTACGCCGCATCCGGCTATCAATgcctgtt                                                                                             <  2:2259633‑M1/100‑8 (MQ=255)
      aTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat                                                                                             >  1:3285104‑M1/1‑93 (MQ=255)
      aTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat                                                                                             >  2:1135295‑M1/1‑93 (MQ=255)
       ttCCCGCTCCCTTATGGGTGAAGGTTAACGCTCGGGTAACCTTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATg                                                                                            <  2:1796754/100‑1 (MQ=255)
       ttCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATg                                                                                            <  1:2671165/100‑1 (MQ=255)
       ttCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATg                                                                                            <  1:2189387/100‑1 (MQ=255)
        tCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGc                                                                                           <  1:1878941/100‑1 (MQ=255)
        tCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGc                                                                                           >  1:2299099/1‑100 (MQ=255)
        accttcTCCCATAAGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGc                                                                                           >  1:1402651/6‑100 (MQ=37)
         cccGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCATTGATTGCCGGATGCg                                                                                          <  1:1551004/100‑1 (MQ=25)
          ccGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGa                                                                                         >  2:469198/1‑100 (MQ=255)
          ccGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGa                                                                                         >  2:2095593/1‑100 (MQ=255)
           cGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGAc                                                                                        >  2:836535/1‑100 (MQ=255)
              ccgatcttGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCt                                                                                     <  2:335225/93‑1 (MQ=255)
               cccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                                                    <  2:1947751/100‑1 (MQ=255)
               cccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                                                    >  1:401511/1‑100 (MQ=255)
               cccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                                                    <  2:2664476/100‑1 (MQ=255)
               attaaccgcgtcacgctttatagcggttaatcatcgtcgatATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgcgg                                                                                    >  1:3012189‑M2/42‑98 (MQ=255)
               attaaccgcgccacgctttatagcggttaatcatcgtcgatATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgcgg                                                                                    >  2:2232012‑M2/42‑98 (MQ=255)
                ccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGt                                                                                   >  1:3006215/1‑100 (MQ=255)
                ccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGt                                                                                   >  1:2641418/1‑100 (MQ=255)
                ccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGt                                                                                   <  1:1732959/100‑1 (MQ=255)
                 cTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTc                                                                                  >  1:434736/1‑100 (MQ=255)
                 cTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTc                                                                                  >  1:515554/1‑100 (MQ=255)
                  ttATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcg                                                                                 <  2:2866423/100‑1 (MQ=255)
                    ccgcgccacgctttatagcggttaatcatcgtcgatATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgcg                                                                               >  1:1007885‑M2/37‑100 (MQ=255)
                    aTGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCTCATCCGGCAATCAATGCCTGATGCGACGCTGTcgcg                                                                               <  2:2359917/100‑1 (MQ=255)
                     tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                              >  2:1373526/1‑100 (MQ=255)
                     tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCCTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                              <  1:1857717/100‑1 (MQ=255)
                      gggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                                                             >  1:2447738/1‑100 (MQ=255)
                        gagaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                           >  2:1881006/1‑100 (MQ=255)
                          gaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAT                                                                         <  1:3257435‑M2/100‑1 (MQ=255)
                           aaGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATC                                                                        >  1:1460793‑M2/1‑100 (MQ=255)
                             ggTTAACGCTCGGGTAACCCTTGCGGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCAATCAATGGCTGATGCGACGATGTCGCGt                                                                              >  1:3287571/1‑92 (MQ=25)
                             ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAG                                                                      <  2:1536494‑M2/100‑1 (MQ=255)
                             ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAG                                                                      <  2:309904‑M2/100‑1 (MQ=255)
                             ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAG                                                                      >  2:2801578‑M2/1‑100 (MQ=255)
                                tAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGcc                                                                   <  1:2797683/100‑1 (MQ=255)
                                  aCGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTa                                                                 <  2:2826618/100‑1 (MQ=255)
                                   cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTAc                                                                <  2:886654/100‑1 (MQ=255)
                                   cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTAc                                                                >  1:2395062/1‑100 (MQ=255)
                                     cTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa                                                              >  1:805398/1‑100 (MQ=255)
                                       cGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAAc                                                            <  1:1373521/100‑1 (MQ=255)
                                            aaCCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTa                                                       <  1:2509985/100‑1 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                     >  1:1627014/1‑100 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                     <  1:2547243/100‑1 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                     >  2:2416984/1‑100 (MQ=255)
                                               ccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgc                                                    <  1:157532‑M1/100‑49 (MQ=255)
                                               ccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCg                                                    >  2:420636/1‑100 (MQ=255)
                                               ccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCg                                                    >  1:2977724/1‑100 (MQ=255)
                                                  tGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACt                                                 >  1:2099554/1‑100 (MQ=255)
                                                   gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTc                                                <  2:65688/100‑1 (MQ=255)
                                                   gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTc                                                >  2:1105560/1‑100 (MQ=255)
                                                   gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTc                                                <  1:201286/100‑1 (MQ=255)
                                                   gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTc                                                >  1:3332087/1‑100 (MQ=255)
                                                         tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCg                                          <  2:2901139/100‑1 (MQ=255)
                                                           tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCCGGCCTACAAACCGTTACCGACTCGCATCggg                                        >  1:1242654/1‑100 (MQ=255)
                                                           tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCggg                                        >  1:3143811/1‑100 (MQ=255)
                                                             ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      >  1:1430724/1‑100 (MQ=255)
                                                                 ggATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATtg                                  <  2:3253841/100‑1 (MQ=255)
                                                                   aTAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATtgtg                                <  1:354585/100‑1 (MQ=255)
                                                                    tAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTgg                               <  2:2447756/100‑1 (MQ=255)
                                                                     aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                              <  1:2840983/100‑1 (MQ=255)
                                                                       ggCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGtt                            >  1:906581/1‑100 (MQ=255)
                                                                       ggCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGtt                            >  2:26489/1‑100 (MQ=255)
                                                                       ggCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGtt                            >  1:2503816/1‑100 (MQ=255)
                                                                         cGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTAc                          >  2:2968703/1‑100 (MQ=255)
                                                                         cGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGC‑‑‑‑‑ATCAGGCattgattgccggatgcggcgtaaacgccttatccggcctacattcgg                     <  1:586458‑M2/100‑48 (MQ=255)
                                                                          gTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACg                         >  1:448348/1‑100 (MQ=255)
                                                                          gTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACg                         >  2:3165055/1‑100 (MQ=255)
                                                                          gTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACg                         >  2:1724383/1‑100 (MQ=255)
                                                                           tttACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACg                         <  2:221948/99‑1 (MQ=255)
                                                                           tttACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGa                        <  2:2283310/100‑1 (MQ=255)
                                                                            ttACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGAt                       >  2:84836/1‑100 (MQ=255)
                                                                             tACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATg                      >  2:1632543/1‑100 (MQ=255)
                                                                             tACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATg                      <  1:462793/100‑1 (MQ=255)
                                                                             attgccggATGCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGa                        >  1:1516352/4‑98 (MQ=255)
                                                                                gtcgcATCAGGCATTGATTGCCGGATGCGGCGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCa                   >  1:1469934/3‑100 (MQ=25)
                                                                                 ccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCAt                  >  2:354605/1‑100 (MQ=255)
                                                                                  cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATc                 >  1:1614297/1‑100 (MQ=255)
                                                                                   gcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCattgattgccggatgcggcgtaaacgccttatccggcctacattcggcaagg                <  1:157532‑M2/100‑53 (MQ=255)
                                                                                     aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgcg              <  2:733820/100‑1 (MQ=255)
                                                                                     aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgcg              >  2:100723/1‑100 (MQ=255)
                                                                                         ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAg          >  1:2477874/1‑100 (MQ=255)
                                                                                           caatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGcc        <  1:1105557/100‑1 (MQ=255)
                                                                                           caatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGcc        <  1:1381015/100‑1 (MQ=255)
                                                                                            aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCt       <  2:1929669/100‑1 (MQ=255)
                                                                                              tcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGc     <  2:773031/100‑1 (MQ=255)
                                                                                               caatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCt    >  1:2372368/1‑100 (MQ=255)
                                                                                                aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCtt   >  2:1641627/1‑100 (MQ=255)
                                                                                                 atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCattgattgccggatgcggcgtaaacgccttatacggccgacattcggcaagggatacccgagc     <  2:1482325‑M2/97‑64 (MQ=255)
                                                                                                 atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTtc  <  2:953178/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTC  >  NC_000913/4285244‑4285440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.