New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1432761	NA (NA)	7 (0.060)	5/170	NT	NA	coding (351/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	= 1432785	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

ACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAAC  >  NC_000913/1432689‑1432812                                                                         |                                                    aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATAAAAAAAAAAAAAAACTGt                                  <  1:2846144/92‑1 (MQ=1)                     tATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGCCTCCCGGATCCGgaacagttttt      <  2:2685149/100‑9 (MQ=1)                         gcaggAAGAGAAGTATAAGAAGTGGAACGGCACAGCCTGGGTGAAGTATACGGAAGCAGAAAAACTGTTCCGGATCCGGGATGaaaaaaaaaaaaaaaa   <  1:1664399/96‑1 (MQ=1)                           cgtaaGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGAAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAaac  <  1:1278752/95‑1 (MQ=0)                                                                         |                                                    ACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAAC  >  NC_000913/1432689‑1432812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.