New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3620569 =NA (NA)10 (0.090) 6/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCA  >  NC_000913/3620484‑3620681
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aattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCg                                                                                                    >  1:44604‑M2/99‑100 (MQ=255)
aattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCg                                                                                                    <  2:577707‑M2/2‑1 (MQ=255)
 attcatcatatttccggcgcaattccagcccgtcaggcccggtggctgacgctaactggttgtggtggttatagtaaaacgccgatgccctgccatcc                                                                                                     <  1:2850646‑M2/1‑1 (MQ=255)
 attcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCgg                                                                                                   <  2:386675‑M2/3‑1 (MQ=255)
 attcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCgg                                                                                                   <  1:2933458‑M2/3‑1 (MQ=255)
 attcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCgg                                                                                                   <  1:2933853‑M2/3‑1 (MQ=255)
 attcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCgg                                                                                                   >  1:3112615‑M2/98‑100 (MQ=255)
 attcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCgg                                                                                                   <  1:983591‑M2/3‑1 (MQ=255)
   tcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                 <  1:145367‑M2/5‑1 (MQ=255)
   tcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                 <  1:2796418‑M2/5‑1 (MQ=255)
   tcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                 <  2:1659366‑M2/5‑1 (MQ=255)
   tcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                 <  1:2944251‑M2/5‑1 (MQ=255)
   tcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                 <  2:1549105‑M2/5‑1 (MQ=255)
    catcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                >  1:477685‑M2/95‑100 (MQ=255)
    catcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                >  2:3333382‑M2/95‑100 (MQ=255)
    catcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                >  2:1814944‑M2/95‑100 (MQ=255)
    catcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                >  1:576388‑M2/95‑100 (MQ=255)
                                                                        tagtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGaa                            >  1:1191615‑M2/27‑100 (MQ=255)
                                                                         agtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAat                           >  2:3011431‑M2/26‑100 (MQ=255)
                                                                         agtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAat                           >  2:1082830‑M2/26‑100 (MQ=255)
                                                                         agtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAat                           >  1:2580680‑M2/26‑100 (MQ=255)
                                                                          gtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAata                          >  2:1750316‑M2/25‑100 (MQ=255)
                                                                          gtaaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAata                          >  2:2805180‑M2/25‑100 (MQ=255)
                                                                           taaaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAatat                         >  2:2277402‑M2/24‑100 (MQ=255)
                                                                              aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATatgat                      >  1:1416148‑M2/21‑100 (MQ=255)
                                                                                cgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAATAtgatga                    >  1:1409864‑M2/19‑100 (MQ=255)
                                                                                    gatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTg                <  2:2580700‑M2/86‑1 (MQ=255)
                                                                                                  CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCa  <  1:3016718‑M2/100‑1 (MQ=255)
                                                                                                  CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCa  >  1:2813943‑M2/1‑100 (MQ=255)
                                                                                                  CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCa  >  1:2172508‑M2/1‑100 (MQ=255)
                                                                                                  CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCa  >  1:1683058‑M2/1‑100 (MQ=255)
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CAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCA  >  NC_000913/3620484‑3620681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.