New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4035360NA (NA)20 (0.170) 6/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT  >  NC_000913/4035285‑4035482
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tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                    >  2:672845‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                    >  2:397772‑M2/1‑100 (MQ=255)
 ccTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGCGAAAAAGCGAAGCGGC                                                                                                    <  1:3303136‑M2/99‑1 (MQ=255)
                        cAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGCGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttc                                                                            <  1:516689‑M2/100‑25 (MQ=255)
                                                        gCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgcttt                                            <  2:807621‑M2/100‑57 (MQ=255)
                                                        gCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgcttt                                            <  1:392076‑M2/100‑57 (MQ=255)
                                                        gCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctt                                             <  1:2770763‑M2/99‑56 (MQ=255)
                                                                   acacCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggag                                 <  1:1114580‑M2/100‑68 (MQ=255)
                                                                   acacCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggag                                 <  2:1674962‑M2/100‑68 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttc                              <  2:1899718‑M2/100‑71 (MQ=255)
                                                                       cccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccgtacttct                             <  1:2466433‑M2/100‑72 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                            <  1:243329‑M2/100‑73 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                            <  1:1715747‑M2/100‑73 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                            <  2:508588‑M2/100‑73 (MQ=255)
                                                                         cgcgCCGCTGAGAAAAAGCGAAGCGGgtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggaga                            <  2:1416554‑M2/100‑74 (MQ=255)
                                                                           ngccgctGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  1:2454051‑M2/99‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcggg                         <  2:663887‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  1:1290703‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  1:998206‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  2:1017292‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  2:505334‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  2:1578512‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                         <  2:1235503‑M2/100‑76 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggc      <  2:3069746‑M2/100‑95 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggc      >  2:1336629‑M2/1‑6 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggc      <  1:3201070‑M2/100‑95 (MQ=255)
                                                                                               gcggcgcagggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcg     <  2:1767228‑M2/100‑96 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg    <  1:3030443‑M2/100‑97 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg    <  2:2241327‑M2/100‑97 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc   <  2:241419‑M2/100‑98 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagatctcaggagaacgccgatgacccggcggc   <  2:272687‑M2/100‑98 (MQ=255)
                                                                                                  gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg  >  2:2885049‑M2/1‑2 (MQ=255)
                                                                                                  gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg  >  2:412063‑M2/1‑2 (MQ=255)
                                                                                                  gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg  >  1:1089597‑M2/1‑2 (MQ=255)
                                                                                                   cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg  <  1:610219‑M2/99‑99 (MQ=255)
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TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT  >  NC_000913/4035285‑4035482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.