New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	66697 =	79 (1.160)	5 (0.120) +TCAACGTGAACAGCCCTTCCACCTGAAATTAATTTT	3/126	5.9	9.4%	noncoding (133/248 nt)	REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913	3313196 =	74 (1.090)					intergenic (‑18/+146)	rbfA/infB	30s ribosome binding factor/translation initiation factor IF‑2
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CAACGCCTGATGCGACGCTGGCGCGTCTTATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/66731‑66697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGC  >  NC_000913/3313196‑3313244                                    ||||||||||||||||||||||||||||||||||||                                                  gattGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTGTTAGCCCCTTTTTAAAA                      <  2:1895657/96‑1      CCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAAT                 <  1:511548/100‑1      CCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAAT                 <  2:511548/100‑1       CTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATT                <  2:1318624/100‑1                     GCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGC  <  2:1666523/100‑1                                    ||||||||||||||||||||||||||||||||||||                                                  CAACGCCTGATGCGACGCTGGCGCGTCTTATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/66731‑66697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAGGGGCTGTTAGCCCCTTTTTAAAATTAATTTCAGGTGGAAGGGC  >  NC_000913/3313196‑3313244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.