| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,115,627 | C→T | intergenic (‑137/+35) | mdtG ← / ← lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,115,627 | 0 | C | T | 96.9% | 215.3 / ‑1.7 | 65 | intergenic (‑137/+35) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (22/41); total (22/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
AAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATAC > NC_000913/1115531‑1115722 | aagaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCgg < 2:1949827/100‑1 (MQ=255) aaaaGATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATg < 2:2185207/100‑1 (MQ=255) tAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTc < 2:1553009/100‑1 (MQ=255) tAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTc > 2:1038200/1‑100 (MQ=255) tAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTc < 2:354728/100‑1 (MQ=255) tAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTc < 1:354728/100‑1 (MQ=255) aGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTg < 2:54348/100‑1 (MQ=255) aGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTg < 1:54348/100‑1 (MQ=255) acacTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAg < 2:1249235/100‑1 (MQ=255) acacTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAg < 2:316814/100‑1 (MQ=255) acacTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAg < 1:316814/100‑1 (MQ=255) cacTAATTATGCGCCCGACTTCCAAGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGc > 1:236029/1‑100 (MQ=255) cacTAATTATGCGCCCGACTTCCAAGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGc > 2:236029/1‑100 (MQ=255) gcgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATg > 2:903212/1‑100 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg > 2:2019039/1‑100 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg > 1:143914/1‑100 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg > 2:143914/1‑100 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg > 2:1359927/1‑100 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg > 2:1231531/1‑100 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg < 2:750552/100‑1 (MQ=255) cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATgg < 1:750552/100‑1 (MQ=255) gcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATggg < 2:2491732/100‑1 (MQ=255) cGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 1:80392/1‑100 (MQ=255) cGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 2:80392/1‑100 (MQ=255) gACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAACTCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 2:644020/100‑1 (MQ=255) gACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAACTCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:644020/100‑1 (MQ=255) cTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:8612/100‑1 (MQ=255) cTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 2:8612/100‑1 (MQ=255) tCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTaa > 2:430443/1‑100 (MQ=255) tCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTaa > 2:2026227/1‑100 (MQ=255) tCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTaa > 1:430443/1‑100 (MQ=255) ccAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAAt < 2:737264/100‑1 (MQ=255) ccAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAAt < 1:737264/100‑1 (MQ=255) aGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAg > 2:2045397/1‑100 (MQ=255) aGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAg < 2:1417687/100‑1 (MQ=255) ggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTg < 2:2053026/100‑1 (MQ=255) ggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTg < 2:452141/100‑1 (MQ=255) ggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTg < 1:452141/100‑1 (MQ=255) tcttCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg < 2:130810/97‑1 (MQ=255) tcttCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg < 1:130810/97‑1 (MQ=255) aTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGaa > 2:767614/1‑100 (MQ=255) aTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGaa > 1:767614/1‑100 (MQ=255) gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCg > 1:36454/1‑100 (MQ=255) gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCg > 2:36454/1‑100 (MQ=255) ttttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCggg < 2:1979029/100‑1 (MQ=255) tttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCggg < 2:1153/99‑1 (MQ=255) tttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCggg < 1:1153/99‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCg < 2:1769116/100‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtt < 2:1129769/100‑1 (MQ=255) gCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGttt < 2:906497/100‑1 (MQ=255) gCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGttt > 2:2454083/1‑100 (MQ=255) gCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGttt < 1:486525/100‑1 (MQ=255) gCTAAATCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGttt < 2:486525/100‑1 (MQ=255) aaTCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaaa < 2:1204848/100‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAg < 1:311626/100‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAg < 2:311626/100‑1 (MQ=255) cAGGGGGATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCg > 2:1057451/1‑100 (MQ=255) gggATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACgn < 2:684606/100‑2 (MQ=255) gggATTTGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACgn < 1:684606/100‑2 (MQ=255) tGCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 2:2545514/100‑1 (MQ=255) gCTGTGGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAcc < 2:2042757/100‑1 (MQ=255) gtgGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca < 1:87803/100‑1 (MQ=255) gtgGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca < 2:87803/100‑1 (MQ=255) tgGTAATGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACat < 2:2285586/100‑1 (MQ=255) aaTGTCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATAc > 2:1827805/1‑100 (MQ=255) | AAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATAC > NC_000913/1115531‑1115722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |