| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3650792 | NA (NA) | 7 (0.060) | 4/166 | NT | NA | noncoding (81/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3650805 | NA (NA) | noncoding (94/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3650688‑3650792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgaTGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAAA < NC_000913/3650805‑3650707 GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG > 1:3537391/1‑100GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG < 1:2411791/100‑1GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG < 2:3637772/100‑1GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG < 1:2973968/100‑1 TTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGC < 1:2853722/100‑1 TTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGAATGTTATTTGTAGGC < 1:2166605/100‑1 TTAGAAAAATGCGCTTTATTTATGTCGGATGCGATGGTGGCGAGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG > 1:378992/1‑99 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 2:938818/1‑100 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 2:2550860/1‑100 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC < 2:260218/100‑1 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 2:3403328/1‑100 GAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTG < 2:2701211/100‑1 GAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTG > 1:2117256/1‑100 AAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGcc < 2:1626243/100‑3 TCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCC < 1:2744953/100‑1 CGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCT < 2:368458/100‑1 GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTA < 1:3555992/100‑1 GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTA < 1:974336/100‑1 GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCC < 1:2195303/98‑1 TGCGACGCTGGGGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTAGTTGTAGGCCGCATGCGCTACGCCTGTCAGGCCTA < 1:1433563/97‑1 TGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTACAA < 1:68356/100‑1 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC > 1:766697/1‑100 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC > 1:3513381/1‑100 CTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACAT > 1:938813/1‑100 CTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACAT < 1:713362/100‑1 CTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACAT > 1:2864503/1‑100 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 2:321773/1‑100 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 1:3251842/1‑100 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 2:395327/1‑100 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 1:1295528/1‑100 GATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAA > 2:3504883/1‑100 ATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAAA > 2:2600947/1‑100 ATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAAA < 2:3471309/100‑1 ATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATCTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAAA > 1:2290061/1‑100 GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3650688‑3650792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgaTGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAAA < NC_000913/3650805‑3650707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |