| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3910442 | NA (NA) | 4 (0.030) | 4/168 | NT | NA | intergenic (‑44/+43) | pstC/pstS | phosphate ABC transporter permease/phosphate ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 3910473 | NA (NA) | noncoding (31/35 nt) | REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AAATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3910344‑3910442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTATGGCTGCAACCAAGCCTGCTTTTAAC < NC_000913/3910473‑3910372 AAATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATG < 1:2294132/100‑1 AATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGC < 1:1022276/100‑1 AATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGC < 1:1804681/100‑1 TTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCG < 1:2713472/100‑1 TTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCG > 2:912599/1‑100 AAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGGTACGGTGTTTTACGCCGCATCCGGCATT < 2:427126/100‑1 AGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGGTACGGTGTTTTACGCCGCATCCGGCATTA < 1:1043911/100‑1 GCTTGGTTGCAGCCATAAGTTACTCTTCCGTTAAACGGGTTCACAAAGTCATTTTGTAATGCCTGGTACGGTGTTTTACGCCGCATCCGGCATTACA < 1:1847982/97‑1 TGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATGCCGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGA < 1:533014/100‑1 CCGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTATGGCTGCAACCAAGCCTGCTTTTAA > 2:241127/1‑100 CGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTATGGCTGCAACCAAGCCTGCTTTTAAC < 1:1083236/100‑1 CGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTATGGCTGCAACCAAGCCTGCTTTTAAC > 2:1184182/1‑100 CGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTATGGCTGCAACCAAGCCTGCTTTTAAC > 2:909991/1‑100 AAATTATGTCGCCCTTTTTACCCGGTGGGTTAAAAGCAGGCTTGGTTGCAGCCATAAGTTACTCTTCAGTTAAACGCGTTTACAAAGTCATTTTGTAATgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3910344‑3910442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTATGGCTGCAACCAAGCCTGCTTTTAAC < NC_000913/3910473‑3910372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |