| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4569947 = | NA (NA) | 9 (0.070) | 8/166 | NT | NA | noncoding (2/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4569970 = | NA (NA) | noncoding (25/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TGTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4570051‑4569947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA > NC_000913/4569970‑4570067 TGTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCA < 2:2588600/100‑1 GTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCAT > 1:564102/1‑100 TTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATC < 2:822889/100‑1 TCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCA > 2:1580151/1‑100 CATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAG < 2:1387812/100‑1 ATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGTCCTGATAAGCATAGCGCATCAG < 1:1154152/99‑1 ATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG > 1:650668/1‑100 ATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCA < 2:2942744/98‑1 ATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATC < 1:1748484/97‑1 GTTCAATATATTTAATGGGTTATGTAGACCTGATACGCATAGCGCATCAGGACTACATAACCCATTAAATATATTGTACTTTAAAGATTTTTGTAGACt > 1:152093/1‑98 TTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTT > 1:1443489/1‑100 ATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCAC > 2:1838298/1‑100 TGTAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATC > 2:2559632/1‑100 TAGACCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCG > 1:1954002/1‑100 AGACCTGATAAGCATAGCGCATCAGGACTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCG > 2:3508251/1‑99 CCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCAT > 2:1203249/1‑100 CCTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCAT > 2:2283134/1‑100 CTGATAAGCATAGCGCATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATACGGCATG < 2:1954012/100‑1 ATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTG > 2:2002898/1‑100 TCAGGTCTACATAACCCATTAAATATATTGAACTCTAAAGATTGTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGC < 2:2124865/100‑1 CAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCT > 1:2594273/1‑100 AGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTT < 2:3190902/100‑1 GGTCTACATAAGCCATTAAATATATTGAGCTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCAAGAACAAAGCGTACTTTGCTTA < 1:2968721/100‑1 GGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA > 2:566700/1‑100 TGTTCATGCCGGATGCCATGTGAACGCCTGACCAGGTCTACAAAAATCTTTAAAGTTCAATATATTTAATGGGTTATGTAGACCTGATAAGCATAGCGCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4570051‑4569947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTA > NC_000913/4569970‑4570067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |