| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 392927 = | 68 (0.520) | 9 (0.070) | 5/166 | NT | 17.1% | noncoding (40/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 2170229 | 24 (0.200) | noncoding (59/1258 nt) | IS3 | repeat region | |||||
TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/393031‑392927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTATC < NC_000913/2170229‑2170131 TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG < 2:933008/100‑1TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG < 1:123182/100‑1 AACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 2:87174/100‑1 AACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 2:1158149/100‑1 AACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG < 1:2257535/100‑1 CGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG < 1:3296858/100‑1 CGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAG > 1:2999514/1‑100 GTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT > 1:2345518/1‑100 GTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT < 1:1128150/100‑1 GTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT < 1:2051323/100‑1 GTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCAC < 1:2783781/100‑1 GTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCAC < 2:2071915/100‑1 CGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:2815116/100‑1 CGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:2376026/100‑1 CGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:201916/100‑1 GGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC < 2:3243087/100‑1 GGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 1:50384/99‑1 GTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC < 2:2955581/100‑1 GATAGTATTGGCGTACAGGTTGTAATCTGCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGCACCTCTGACTGAGAGTTTACTCACTTAGCCGC < 1:2243332/100‑1 GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGC < 1:36156/100‑1 GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGC < 2:3722200/100‑1 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCT > 2:1996944/1‑100 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCT < 1:1427702/100‑1 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCT < 1:2671448/100‑1 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTT < 2:653158/100‑1 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTA > 1:525072/1‑100 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTA < 1:2796085/100‑1 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTAT > 1:1040475/1‑100 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTAT > 2:576417/1‑100 TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTATC < 2:80157/100‑1 TCAACGTTCACATCCAATACACCGCCGTTAGTTACGGTGATAGTATTGGCGTACAGGTTGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/393031‑392927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGACCGTTATTCTCGACAGCGGAAGTACGACAATGCTTATC < NC_000913/2170229‑2170131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |