| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3277814 | NA (NA) | 8 (0.070) | 6/162 | NT | NA | intergenic (+13/+42) | yhaV/agaR | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system/transcriptional repressor of the aga regulon |
| ? | NC_000913 | = 3277847 | NA (NA) | noncoding (29/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATgcccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3277714‑3277814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCTC < NC_000913/3277847‑3277743 CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAA > 1:3712414/1‑100CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAA < 1:386642/100‑1 TATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAACCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAAT < 1:3328815/100‑1 ATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATG < 2:1869802/100‑1 TACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGC > 1:1279323/1‑100 ACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCC > 1:2929324/1‑100 ACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCC > 1:3572238/1‑100 GTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGC < 2:3097382/100‑1 GTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGC > 2:2824665/1‑100 CATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGC < 1:1514806/100‑1 CATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGC < 1:1571065/100‑1 TCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCAT < 2:828249/100‑1 CTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTG < 2:3287736/100‑1 CTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTG < 2:655190/100‑1 CCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTG < 1:2066329/100‑1 CTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGA < 1:2487547/100‑1 CCGACTGGGAAAACCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACA < 2:838870/100‑1 ccgatctTGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCA < 2:1832445/93‑1 ATGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGGTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGA < 1:729533/100‑1 GCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATG < 2:3213748/100‑1 CCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGT > 2:229870/1‑100 GCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCT > 2:3712442/1‑100 CTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCTC > 2:6766/1‑100 CTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGGTTCCCAGTCGGCAGGAGGATGTCCTC > 2:3123010/1‑100 CTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATgcccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3277714‑3277814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGCCCGCTGGTCAACACGAATGCGTTCGGCGGGCATTGTGAACACCATCAATGGGTTTCTTCTGTTTCTCGGGTGAGGGTTTCCCAGTCGGCAGGAGGATGTCCTC < NC_000913/3277847‑3277743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |