New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4037477	NA (NA)	22 (0.180)	7/170	NT	36.6%	intergenic (+142/‑42)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA of rrnA operon
	?	NC_000913	= 4168637	40 (0.300)					intergenic (+190/‑4)	gltT/rrlB	tRNA‑Glu/23S ribosomal RNA of rrnB operon

GTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCG  >  NC_000913/4037383‑4037495                                                                                               |                   gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca               >  2:868524/1‑100 (MQ=11)  ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac              >  2:1853325/1‑100 (MQ=31)    cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga            >  1:54301/1‑100 (MQ=33)    cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga            >  2:1653030/1‑100 (MQ=32)      cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg          <  1:1586458/100‑1 (MQ=32)      cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg          >  2:694738/1‑100 (MQ=33)       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga         >  2:2134712/1‑100 (MQ=33)       tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga         <  2:736966/100‑1 (MQ=32)        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacagatcgga        >  2:1403865/1‑93 (MQ=2)        gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCCGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat        >  2:2827381/1‑100 (MQ=18)         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg       >  1:3575247/1‑100 (MQ=33)         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg       <  1:3645878/100‑1 (MQ=33)         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg       <  2:2085661/100‑1 (MQ=33)         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg       <  1:1661364/100‑1 (MQ=33)           aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTTAAAATTAAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa     <  1:2931871/100‑1 (MQ=16)           aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa     >  1:395275/1‑100 (MQ=33)             gTTTTTGTCTTCAAAAATCAGGAGCAAGCTGAAAATTGCAAAACTTCACAACAAAAGTTGTTCGTGAGGCTCTCAAATTTTCGCAacatcaaaatta      <  1:3141605/97‑10 (MQ=2)             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc   <  1:2847877/100‑1 (MQ=31)             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc   >  1:2186623/1‑100 (MQ=31)              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGACCAACGAAAGTTGTTCGTGAGTTTCTCAAATTTTCGCAACACGATGATGAATCg  <  1:2853330/100‑1 (MQ=2)                                                                                               |                   GTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCG  >  NC_000913/4037383‑4037495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.