| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4166372 | 26 (0.200) | 10 (0.080) | 7/168 | NT | 29.0% | intergenic (+87/‑287) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4166399 | NA (NA) | intergenic (+114/‑260) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon | |||||
AGTTTTAGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCG > NC_000913/4166273‑4166471 | aGTTTTAGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC < 1:577888‑M1/100‑1 (MQ=255)aGTTTTAGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC < 1:1201564‑M1/100‑1 (MQ=255) gTTTTAGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGaca > 2:1554673/1‑100 (MQ=255) tttAGGCTGATTTGGTTGAATTTTGCGCGGTCAGAAAATTATTTTAAATATACTCTTGTCAGGCCTGAATAACTCCCTATAAGGCAAAACCACAGACACg < 1:1008399/100‑1 (MQ=17) tttAGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg < 1:2777376/100‑1 (MQ=255) tgaGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCGTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg < 1:1135865/98‑1 (MQ=255) ggCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaac > 2:577589/1‑100 (MQ=255) ggCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTAAGGCCGGAATAAATCCCTATAATGCGACAACACTGAAACGGaa > 1:1057464/1‑99 (MQ=17) gCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca < 2:3157419/100‑1 (MQ=255) tGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 2:176774/100‑1 (MQ=255) tGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 1:3056156/100‑1 (MQ=255) gATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg > 2:366535/1‑100 (MQ=255) tttGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:1127469/1‑100 (MQ=255) tttGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:1932159/1‑100 (MQ=255) ttGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCa < 1:1492065/100‑1 (MQ=255) ttGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCa < 2:2223479/100‑1 (MQ=255) ggTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 2:861008/1‑100 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaan < 1:2738662/100‑2 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 1:1219205/100‑1 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 2:2718585/1‑100 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 1:1686415/1‑100 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 1:1640668/100‑1 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 1:637529/100‑1 (MQ=40) gTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:1470004/100‑1 (MQ=40) ttGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca > 2:3439107/1‑100 (MQ=38) ttGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca < 1:2040527/100‑1 (MQ=38) tGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 2:323244/1‑100 (MQ=38) aTGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAcgcc < 2:1250556/100‑1 (MQ=33) tGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAcgccg > 2:303597/1‑100 (MQ=32) tGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAcgccg < 1:317093/100‑1 (MQ=32) tGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAcgccg > 2:1499178/1‑100 (MQ=32) tGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAcgcc > 1:1567545/1‑99 (MQ=32) cgGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATCATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtc < 1:1696532‑M1/100‑31 (MQ=255) gTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcag < 2:1116912‑M1/100‑33 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 1:304494‑M1/100‑34 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 2:2374165‑M1/100‑34 (MQ=255) cAGAAAATTATTTCAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:679002‑M1/100‑35 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcagcgtgtttgccgttgttccgtgtcagtggt < 1:2799556‑M1/100‑37 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 2:1415967‑M1/100‑39 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:604541‑M1/100‑39 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:50740‑M1/100‑39 (MQ=255) aaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggc < 2:183318‑M1/100‑40 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatataaaataattttctgac > 2:680446‑M1/1‑5 (MQ=255) tGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgacc < 1:493008‑M1/100‑97 (MQ=255) tGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgacc > 2:2596206‑M1/1‑4 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 2:1254749‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 1:1912441‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 2:3221726‑M1/100‑98 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 2:183780‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgtgccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 1:2215984‑M1/100‑98 (MQ=255) aCccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgc > 1:117674‑M1/1‑2 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatatggagttattccggcctgacaagaggaaatttaaaaaaatttcctgacc > 1:1419971‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:2903353‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 2:1646132‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:265389‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:26423‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:1424667‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:110639‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:1340048‑M1/1‑1 (MQ=255) | AGTTTTAGGCTGATTTGGTTGAATGTTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCG > NC_000913/4166273‑4166471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |