New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2662541NA (NA)14 (0.120) 10/164 NT NA noncoding (233/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 = 2662574 NA (NA)noncoding (266/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 150 total aligned reads displayed.

CACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGG  >  NC_000913/2662443‑2662640
                                                                                                  |                                                                                                   
cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    >  2:2078187‑M1/1‑99 (MQ=255)
 aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACAGTTCTGTTCAGTGTAGgc                                                                                                   >  1:258861‑M1/1‑98 (MQ=255)
 aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgc                                                                                                   <  2:1865139‑M1/100‑3 (MQ=255)
 aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgc                                                                                                   >  1:1272473‑M1/1‑98 (MQ=255)
 aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgc                                                                                                   <  2:301594‑M1/100‑3 (MQ=255)
 aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    <  2:2505256‑M1/99‑2 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGTATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTGCACTGTAGgcc                                                                                                  >  1:1569007‑M1/1‑97 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  >  2:2351639‑M1/1‑97 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  <  1:2993669‑M1/100‑4 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  >  2:1470775‑M1/1‑97 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcc                                                                                                  <  2:328995‑M1/100‑4 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGg                                                                                                    <  1:455430‑M1/98‑2 (MQ=255)
  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCCGATGCGGCGTGAACGCCTTATCCGACCTACGGTTGTGTTCAGTGTAGgcc                                                                                                  >  1:3051313‑M1/1‑97 (MQ=255)
    gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                <  2:1123915‑M1/100‑6 (MQ=255)
    gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctg                                                                                                <  2:295578‑M1/100‑6 (MQ=255)
     tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctga                                                                                               <  1:1926136‑M1/100‑7 (MQ=255)
     tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctga                                                                                               <  1:1678856‑M1/100‑7 (MQ=255)
      aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGTTGCGGCGGGAACCCCTTATCCGCCCTACGGTTCTGTTCAGTGTCGgcc                                                                                                  >  1:3518409‑M1/1‑93 (MQ=255)
      aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgat                                                                                              <  2:3318864‑M1/100‑8 (MQ=255)
       ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGGTCACTGTAGgcctgat                                                                                              >  1:2064456‑M1/1‑92 (MQ=255)
             aTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGGGGCGTGAACGCCTTATCCGACATACGGTTCTGTTCACTGTAGgcctgatacgacgc                                                                                       >  1:1151168‑M1/1‑86 (MQ=255)
                           gcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgataagacgcgtaatgcgtct                                                                            <  1:1327215‑M1/97‑26 (MQ=255)
                             gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatca                                                                       <  1:2808708‑M1/100‑31 (MQ=255)
                                 cATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcc                                                                   <  2:3723090‑M1/100‑35 (MQ=255)
                                  aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcct                                                                  <  1:365572‑M1/100‑36 (MQ=255)
                                  aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcct                                                                  <  2:2850534‑M1/100‑36 (MQ=255)
                                  aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcct                                                                  <  1:1185581‑M1/100‑36 (MQ=255)
                                      ggCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcctacag                                                              <  2:1665440‑M1/100‑40 (MQ=255)
                                          aCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt                                                          <  2:2857938/100‑1 (MQ=11)
                                           ccgatctCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa                                                         <  1:2181657/94‑1 (MQ=9)
                                              cTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                      >  2:1987992/1‑100 (MQ=35)
                                                gtgggATGCGGCGTGAACGCCTTATCCGGCCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg                                                    <  1:2158887/97‑1 (MQ=255)
                                                gTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCgg                                                    <  2:3599970/100‑1 (MQ=38)
                                                 tCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGc                                                   <  2:3274180/100‑1 (MQ=38)
                                                 tCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGc                                                   <  1:3630212/100‑1 (MQ=38)
                                                  cGGTTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGcc                                                  <  1:2007057/100‑1 (MQ=255)
                                                  cGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTaagatcgg                                                  >  2:2181667/1‑93 (MQ=9)
                                                   ggATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCt                                                 <  2:188500/100‑1 (MQ=40)
                                                     aTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:950764/100‑1 (MQ=255)
                                                     aTGCGGCGTGAACCCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg                                               <  1:655350/100‑1 (MQ=255)
                                                      tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGACCTTGt                                              <  2:1962124/100‑1 (MQ=255)
                                                        cggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTa                                            <  2:940607/100‑1 (MQ=255)
                                                         ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgatgcgacgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcg                                           <  1:1136365‑M1/100‑59 (MQ=255)
                                                         ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                           <  2:406672/100‑1 (MQ=255)
                                                         ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                           <  2:406450/100‑1 (MQ=255)
                                                          gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                          <  1:1044069/100‑1 (MQ=255)
                                                          gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                          >  2:558136/1‑100 (MQ=255)
                                                          gcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                          >  1:2012717/1‑100 (MQ=255)
                                                           cgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt                                         <  2:1107742/100‑1 (MQ=255)
                                                              tcacgccgcaTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACCCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt                                         >  2:3381618/10‑97 (MQ=17)
                                                              gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                      <  2:75323/100‑1 (MQ=255)
                                                                aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt                                    <  2:1557530/100‑1 (MQ=255)
                                                                 cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   <  2:746254/100‑1 (MQ=255)
                                                                 cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   >  1:822522/1‑100 (MQ=255)
                                                                 cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   >  1:2400146/1‑100 (MQ=255)
                                                                 cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc                                   >  2:1457839/1‑100 (MQ=255)
                                                                  gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTct                                  >  2:2357473/1‑100 (MQ=255)
                                                                   ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg                                 >  2:834219/1‑100 (MQ=255)
                                                                   ccTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg                                 >  1:700925/1‑100 (MQ=255)
                                                                    cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                >  2:93090/1‑100 (MQ=255)
                                                                    cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                <  2:1284036/100‑1 (MQ=255)
                                                                    cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgc                                <  2:3175018/100‑1 (MQ=255)
                                                                      tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg                              <  1:3626641/100‑1 (MQ=255)
                                                                      tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgctg                              <  2:3255072/100‑1 (MQ=255)
                                                                        tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct                            >  1:1809615/1‑100 (MQ=255)
                                                                        tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct                            <  2:888261/100‑1 (MQ=255)
                                                                         ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGTCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           <  1:2930617/100‑1 (MQ=255)
                                                                         ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc                           >  1:2310440/1‑100 (MQ=255)
                                                                             ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       <  2:1864927/100‑1 (MQ=255)
                                                                             ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa                       <  2:719288/100‑1 (MQ=255)
                                                                               tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATCACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGa                     >  2:2628894/1‑100 (MQ=255)
                                                                                 cgcttCTGTTCTCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAg                      <  1:413735/94‑1 (MQ=255)
                                                                                 cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   >  2:783817/1‑100 (MQ=255)
                                                                                 cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   <  2:1485218/100‑1 (MQ=255)
                                                                                 cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   <  1:2401693/100‑1 (MQ=255)
                                                                                 cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg                   <  1:2628879/100‑1 (MQ=255)
                                                                                  ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTCCGCGTCGCATCAGGCCACGGCTGTTATTCGGCCTTGTTACCTTTATTCTCCTGCTCAATAGaa                    <  1:1849995/98‑1 (MQ=255)
                                                                                  ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                  >  2:1359860/1‑100 (MQ=255)
                                                                                   gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGcc                 >  2:904665/1‑100 (MQ=255)
                                                                                   gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGcc                 <  1:3446250/100‑1 (MQ=255)
                                                                                     tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg               <  1:1552885/100‑1 (MQ=255)
                                                                                      cTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGa              <  1:2839896/100‑1 (MQ=255)
                                                                                       tGTCCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa             <  1:125306/100‑1 (MQ=255)
                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTTGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAACTTTATTCTGCTGCTCAATACAAGccccaa             >  1:3623596/1‑95 (MQ=21)
                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt            <  1:2298006/100‑1 (MQ=255)
                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt            >  2:1942782/1‑100 (MQ=255)
                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt            <  2:1028535/100‑1 (MQ=255)
                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAAt            >  1:1252038/1‑100 (MQ=255)
                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATCCTGCTGCTCAATAGAAGCCAGAAt            >  1:3197696/1‑100 (MQ=255)
                                                                                         ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATc           <  1:2078177/100‑1 (MQ=255)
                                                                                          tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATcc          >  2:1575120/1‑100 (MQ=255)
                                                                                          tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGACTTGTTACCTTTCTTCTGCTGATCAATAGCAGCCGGaacc           >  2:1242434/1‑97 (MQ=21)
                                                                                           cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc         >  2:528972/1‑100 (MQ=255)
                                                                                           cACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc         >  1:2998781/1‑100 (MQ=255)
                                                                                            aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg        <  1:616970/100‑1 (MQ=255)
                                                                                               gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCgcgc     <  2:1369016/100‑1 (MQ=255)
                                                                                               gTAGGCCTGACAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTCTTCTGCTGCTCAATAGAAGCCAGAATCCCgcgc     <  1:2446734/100‑1 (MQ=255)
                                                                                                tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCa    <  1:2931130/100‑1 (MQ=255)
                                                                                                 aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAg   <  2:793268/100‑1 (MQ=255)
                                                                                                  ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATACTGCTGCTCCATAAAAGCCAGAATACCGCGCAgg  >  1:2564469/1‑100 (MQ=37)
                                                                                                  |                                                                                                   
CACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGG  >  NC_000913/2662443‑2662640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.