New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729453 =	NA (NA)	20 (0.170)	12/158	NT	71.5%	intergenic (‑9/+163)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	2729475 =	9 (0.070)					intergenic (‑31/+141)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon

CACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTA  >  NC_000913/2729355‑2729501                                                                                                   |                                                 cataaaCCAACAATTGGCGTCCCCTAGGGGATTCGAACACCTGTCAGCGCTGTGCAAGGGCGGAGACCGCGTCCTCTAGTCGAATGGGACACGAAAATTg                                                 >  1:2697295/4‑100 (MQ=0)                                                 gcagTGAATGGGCGGTGTTCTGGGCGTCTAGACGTAGGGCACACGAAGCGGGCGTATTTCGCGTTGCGTGATAGTTGCGTGTAGGGTGAGCTTGCATTa  <  1:1591657/96‑1 (MQ=0)                                                                                                   |                                                 CACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTA  >  NC_000913/2729355‑2729501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.