New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3216644NA (NA)8 (0.070) 5/164 NT NA noncoding (44/78 nt) REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3216674 NA (NA)noncoding (74/78 nt) REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 198 total aligned reads displayed.

ATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAA  >  NC_000913/3216545‑3216743
                                                                                                   |                                                                                                   
  aaTGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgc                                                                                                   >  1:1870309‑M1/1‑98 (MQ=255)
    tGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGTCATCATTACTCAACgcc                                                                                                  >  2:58075‑M1/1‑96 (MQ=255)
    tGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccg                                                                                                 <  1:2916805‑M1/100‑5 (MQ=255)
     gATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGGCGAACCGCCTCTTCTCAGGCATCATTACTCAACgccgn                                                                                                <  1:2298817‑M1/100‑6 (MQ=255)
     gATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccgg                                                                                                <  2:828434‑M1/100‑6 (MQ=255)
     gATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccgg                                                                                                <  1:2716729‑M1/100‑6 (MQ=255)
     gATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccgg                                                                                                >  1:1678459‑M1/1‑95 (MQ=255)
      aTTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccgga                                                                                               <  2:3578283‑M1/100‑7 (MQ=255)
      aTTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccgga                                                                                               >  1:380065‑M1/1‑94 (MQ=255)
        tGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATg                                                                                             >  1:1592797/1‑100 (MQ=255)
         gTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgc                                                                                            <  2:2949008/100‑1 (MQ=255)
         gTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgc                                                                                            >  1:1214230/1‑100 (MQ=255)
          ttAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgcg                                                                                           >  2:722663/1‑100 (MQ=255)
           tAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgcgg                                                                                          <  1:2648536/100‑1 (MQ=255)
           tAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgcgg                                                                                          >  1:77696/1‑100 (MQ=255)
            aaTCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgcggc                                                                                         <  1:1288171/100‑1 (MQ=255)
            aaTCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATgcggc                                                                                         >  1:1179527/1‑100 (MQ=255)
               cATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTg                                                                                      <  1:1057677/100‑1 (MQ=255)
                aTGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGa                                                                                     >  1:3465269/1‑100 (MQ=255)
                  gATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAAc                                                                                   >  2:1080867/1‑100 (MQ=255)
                   aTAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACg                                                                                  <  1:153100/100‑1 (MQ=255)
                     aaaTGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGcc                                                                                <  1:3078534/100‑1 (MQ=255)
                     aaaTGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGcc                                                                                >  1:3031773/1‑100 (MQ=255)
                     aaaTGCAAGCGAATTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGcn                                                                                <  2:1658757/100‑2 (MQ=255)
                          cAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATC                                                                           >  1:1513635‑M2/1‑100 (MQ=255)
                           aaGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccggataaggcgttcacgccgcatcc                                                                          <  1:947426‑M1/100‑28 (MQ=255)
                             gCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                        >  1:1817369‑M2/1‑100 (MQ=255)
                              cGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACgccggataaggcgttcacgccgcatccggc                                                                       <  1:2902297‑M1/100‑31 (MQ=255)
                               gATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                      <  2:1542444/100‑1 (MQ=255)
                               gATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                      >  2:1813391/1‑100 (MQ=255)
                                aTTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                     >  2:2058860/1‑100 (MQ=255)
                                aTTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                     <  1:3199041/100‑1 (MQ=255)
                                 tttGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                    <  2:1697393/100‑1 (MQ=255)
                                  ttGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                   >  1:3662216/1‑100 (MQ=255)
                                   tGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg                                                                  >  2:1852298/1‑100 (MQ=255)
                                   tGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg                                                                  <  2:2699135/100‑1 (MQ=255)
                                    gTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgt                                                                 >  1:1749453/1‑100 (MQ=255)
                                      ngAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgtgt                                                               >  2:240803/2‑100 (MQ=255)
                                       gAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGtgtg                                                              >  1:3120427/1‑100 (MQ=255)
                                       gAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGtgtg                                                              <  2:112514/100‑1 (MQ=255)
                                          cTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTgaga                                                           >  1:668384/1‑100 (MQ=255)
                                          cTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTgaga                                                           <  2:3611436/100‑1 (MQ=255)
                                            gATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATg                                                         <  2:3729744/100‑1 (MQ=255)
                                            gATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAAAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATg                                                         >  1:853953/1‑100 (MQ=255)
                                              tatGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAg                                                       >  1:1354928/1‑100 (MQ=255)
                                              tatGTCCATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCAGATGAg                                                       >  1:2600612/1‑100 (MQ=255)
                                               atGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGt                                                      <  2:2607441/100‑1 (MQ=255)
                                                tGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTc                                                     <  1:927563/100‑1 (MQ=255)
                                                 gTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTcc                                                    >  2:1332855/1‑100 (MQ=255)
                                                 gTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTcc                                                    <  1:2772181/100‑1 (MQ=255)
                                                   cTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCa                                                   >  2:3384430/1‑99 (MQ=255)
                                                   cTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCAc                                                  >  1:1938137/1‑100 (MQ=255)
                                                    tataGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACg                                                 >  1:2493553/1‑100 (MQ=255)
                                                      taGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGtt                                               <  2:2322284/100‑1 (MQ=255)
                                                        gTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTa                                             >  1:2873825/1‑100 (MQ=255)
                                                         tCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaa                                            >  1:49337/1‑100 (MQ=255)
                                                          cTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaa                                           >  2:623422/1‑100 (MQ=255)
                                                           tGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaaa                                          >  2:1796296/1‑100 (MQ=255)
                                                            gATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaaaa                                         <  1:701426/100‑1 (MQ=255)
                                                             aTAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAAt                                        <  2:136344/100‑1 (MQ=255)
                                                                  aCGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttt                                   >  1:323440/1‑100 (MQ=255)
                                                                    gAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttttt                                 <  1:61823/100‑1 (MQ=255)
                                                                      aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTac                               <  2:958558/100‑1 (MQ=255)
                                                                      aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTac                               <  2:872857/100‑1 (MQ=255)
                                                                       ccGCCTCTTCTCCGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTaca                              >  2:2460424/1‑100 (MQ=255)
                                                                       ccGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTacn                              <  1:240850/100‑2 (MQ=255)
                                                                       ccGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTaca                              >  1:1627236/1‑100 (MQ=255)
                                                                       ccGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTaca                              >  1:2386888/1‑100 (MQ=255)
                                                                            tcttctCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGACTCCACGTTTAAAAATCATTTTTACACTTGc                         <  1:2453922/100‑1 (MQ=255)
                                                                             cttctCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCa                        <  2:310850/100‑1 (MQ=255)
                                                                               tctcAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAg                      <  1:3256620/100‑1 (MQ=255)
                                                                                  cAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGATTCCACGTTTAAAAATCATTTTTACACTTGc                         >  1:1018257/1‑94 (MQ=255)
                                                                                   aGGAATCATTACTCAACGCCGGATGCGGAGAGAACGCCTTATCCGGCCTACGTGTGAGATAAAAAAAAAAAAAAAAATCATTTTTACACTTGCAAGAAc                   <  1:3508052/99‑1 (MQ=16)
                                                                                      catcatTACTCAACGCCGGATGTGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTc               <  2:2226057/100‑1 (MQ=255)
                                                                                      catcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTc               >  1:188271/1‑100 (MQ=255)
                                                                                       agcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGGTGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTcn              <  1:2260125/98‑2 (MQ=255)
                                                                                        tcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCat             >  2:2793840/1‑100 (MQ=255)
                                                                                         catTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCata            >  2:3485433/1‑100 (MQ=255)
                                                                                            tACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATcn         <  2:3406406/100‑2 (MQ=255)
                                                                                             aCTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCan        <  1:3443068/100‑2 (MQ=255)
                                                                                             aCTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAg        <  2:594225/100‑1 (MQ=255)
                                                                                              cTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGa       >  2:3172732/1‑100 (MQ=255)
                                                                                              cTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGa       <  2:1938147/100‑1 (MQ=255)
                                                                                              cTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGa       >  2:333477/1‑100 (MQ=255)
                                                                                               tCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGat      <  2:324470/100‑1 (MQ=255)
                                                                                               tCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGat      <  2:1629637/100‑1 (MQ=255)
                                                                                                cgaCGCCGGATGCAGCGTGAACGCCTTATCCAGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGata     >  2:2519310/3‑100 (MQ=255)
                                                                                                cAACGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaa     <  2:380067‑M2/100‑67 (MQ=255)
                                                                                                cAACGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaa     <  2:381439‑M2/100‑67 (MQ=255)
                                                                                                cAACGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaa     <  2:2166191‑M2/100‑67 (MQ=255)
                                                                                                cAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGata     <  1:1101098/100‑1 (MQ=255)
                                                                                                cAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGata     >  2:1973386/1‑100 (MQ=255)
                                                                                                 aaCGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaa     <  1:2717738‑M2/99‑67 (MQ=255)
                                                                                                 aaCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAACTCATTGTTACACTTGCAAGAACGCTCATATCAGatat    >  1:2517227/1‑100 (MQ=255)
                                                                                                  aCgccggatgcggcgtgaacgccttatccggcgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaat   >  2:2898517‑M1/1‑2 (MQ=255)
                                                                                                  aCGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaat   <  2:397913‑M2/100‑69 (MQ=255)
                                                                                                  aCGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaat   <  2:2162430‑M2/100‑69 (MQ=255)
                                                                                                  aCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGAtata   >  1:1767035/1‑100 (MQ=255)
                                                                                                   cGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATaa  >  2:2595823/1‑100 (MQ=255)
                                                                                                   cGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATaa  >  2:1432099/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAA  >  NC_000913/3216545‑3216743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.