BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4638146	128 (0.970)	8 (0.070)	7/156	NT	6.4%	intergenic (+26/‑32)	creC/creD	sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein
*	?	NC_000913	= 4638170	122 (1.060)	8 (0.070)	7/156	NT	6.4%	intergenic (+50/‑8)	creC/creD	sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein
Rejected: Frequency below cutoff threshold.

Only 100 of 160 total aligned reads displayed.

AGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGA  >  NC_000913/4638071‑4638268

aGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGga                                                                                                    >  2:3184596/1‑100 (MQ=255)

 ggAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAg                                                                                                   <  2:633588‑M2/100‑2 (MQ=255)

      gTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagac                                                                                              <  2:1190276‑M2/100‑7 (MQ=255)

      gTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagac                                                                                              <  2:2371904‑M2/100‑7 (MQ=255)

       tGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagact                                                                                             <  2:858261‑M2/100‑8 (MQ=255)

          cGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatg                                                                                          <  1:1946246‑M2/100‑11 (MQ=255)

          cGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatg                                                                                          <  2:740488‑M2/100‑11 (MQ=255)

           gTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgt                                                                                         >  2:2208973‑M2/1‑89 (MQ=255)

             gCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTg                                                                                       >  2:1603202/1‑100 (MQ=255)

               tGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaa                                                                                     <  1:395596/100‑1 (MQ=255)

                ggCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaaa                                                                                    <  2:2799057/100‑1 (MQ=255)

                ggCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaaa                                                                                    >  1:762218/1‑100 (MQ=255)

                ggCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaaa                                                                                    <  1:2841204/100‑1 (MQ=255)

                ctccTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaaa                                                                                    <  2:781627/98‑1 (MQ=255)

                  ccTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGCAAAAGACTATGTTGAAATc                                                                                  >  1:292766/1‑100 (MQ=255)

                   cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATcc                                                                                 >  2:2031852/1‑100 (MQ=255)

                    tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATccc                                                                                >  2:3269125/1‑100 (MQ=255)

                    tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATc                                                                                  <  1:1085234/98‑1 (MQ=255)

                     cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATcccc                                                                               >  2:2482901/1‑100 (MQ=255)

                     cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATcccc                                                                               <  1:656993/100‑1 (MQ=255)

                     cGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATcccc                                                                               >  1:422714/1‑100 (MQ=255)

                       cTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATcccccc                                                                             <  2:2421572/100‑1 (MQ=255)

                         tCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTg                                                                           <  2:2724141/100‑1 (MQ=255)

                          cGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGt                                                                          <  1:1728942/100‑1 (MQ=255)

                           gACTTCACCGTCACTTCACATACCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGtt                                                                         >  1:2167515/1‑100 (MQ=255)

                             cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGACATCCCCCCTGTTCt                                                                       >  2:390060/1‑100 (MQ=255)

                             cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCt                                                                       >  2:55166/1‑100 (MQ=255)

                             cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCt                                                                       >  2:1917669/1‑100 (MQ=255)

                              ttCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCt                                                                       <  1:2373454/99‑1 (MQ=255)

                              ttCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTg                                                                      <  2:3536565/100‑1 (MQ=255)

                                 aCCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaa                                                                   <  2:1580105/100‑1 (MQ=255)

                                  ccagcACTACACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGt                                                                          <  1:3154693/88‑1 (MQ=255)

                                  ccGTCACTTCACCTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGCCTATGTTGAAATCCTCCCTGTTCTGGaaa                                                                  >  1:1516170/1‑100 (MQ=255)

                                  ccGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaa                                                                  >  1:2327109/1‑100 (MQ=255)

                                  ccGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaa                                                                  >  2:1688274/1‑100 (MQ=255)

                                  ccGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaa                                                                  >  2:190978/1‑100 (MQ=255)

                                   cGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaaa                                                                 <  2:2214797/100‑1 (MQ=255)

                                   cGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaaa                                                                 >  1:2679709/1‑100 (MQ=255)

                                   cGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaaa                                                                 <  2:1725602/100‑1 (MQ=255)

                                      cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAACGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGa                                                              >  1:535836/1‑100 (MQ=255)

                                        cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACt                                                            >  1:683699/1‑100 (MQ=255)

                                          tCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgtgggaagaatttgaagctatgtgaagtgacgg                                                          <  2:2780530‑M2/100‑43 (MQ=255)

                                          tCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAg                                                          >  2:2971515/1‑100 (MQ=255)

                                           cacaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGc                                                         >  2:1557071/1‑100 (MQ=255)

                                             caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCt                                                       >  1:1265125/1‑100 (MQ=255)

                                             caTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCt                                                       >  1:3289979/1‑100 (MQ=255)

                                              aTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTg                                                      <  2:3346458/100‑1 (MQ=255)

                                                 gCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                   >  2:31339/1‑100 (MQ=255)

                                                 gCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGttt                                                   >  1:3717424/1‑100 (MQ=255)

                                                  cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTg                                                  >  2:2916259/1‑100 (MQ=255)

                                                   ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTgg                                                 >  1:2589711/1‑100 (MQ=255)

                                                   ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTgg                                                 <  2:2921402/100‑1 (MQ=255)

                                                   tgcAAATTCTTCCAACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTGGCCTGTTTgg                                                 >  2:2537396/3‑100 (MQ=255)

                                                       aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCa                                             >  2:60070/1‑100 (MQ=255)

                                                        aTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAg                                            <  1:3361784/100‑1 (MQ=255)

                                                           cttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTAt                                         >  1:1223111/1‑100 (MQ=255)

                                                              cccACATAGTCTTCGTATCCTGCTGCCATTGCAACGGAgaagactatgtgggaagaatttgaagctatgtgaagtgacggtgaagtcgaagcgaggccag                                      <  1:1331486‑M2/100‑63 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgtgggaagaatttgaagctatgtgaagtgacggtgaagtcgaagcgaggccagc                                     <  1:2289573‑M2/99‑64 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATTCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                    <  1:2071447/100‑1 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                    <  2:1137438/100‑1 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtg                                    >  2:2584837/1‑100 (MQ=255)

                                                                  caTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgtt                                  >  2:3109066/1‑100 (MQ=255)

                                                                   aTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTTAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                 <  1:907755/100‑1 (MQ=255)

                                                                   aTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                 <  2:374477/100‑1 (MQ=255)

                                                                   aTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttg                                 <  1:277353/100‑1 (MQ=255)

                                                                    tAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                >  2:847757/1‑100 (MQ=255)

                                                                    tAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                <  1:1293702/100‑1 (MQ=255)

                                                                     aGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                               >  1:1489978/1‑100 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                              <  1:2138854/100‑1 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                              <  1:852686/100‑1 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                              >  2:3693869/1‑100 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGttgttg                              >  1:3378166/1‑100 (MQ=255)

                                                                       tCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGa                             >  2:2799205/1‑100 (MQ=255)

                                                                       tCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGa                             <  2:82790/100‑1 (MQ=255)

                                                                        cTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAt                            <  1:1781575/100‑1 (MQ=255)

                                                                         ttCGTATCCTGCTGCCATTGCAAAGTAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAtt                           <  1:2857789/100‑1 (MQ=255)

                                                                         ttCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAtt                           >  2:1428992/1‑100 (MQ=255)

                                                                           cGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                         <  2:3163507/100‑1 (MQ=255)

                                                                           cGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                         <  2:2327121/100‑1 (MQ=255)

                                                                           cGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                         >  2:1731654/1‑100 (MQ=255)

                                                                            gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCg                        <  2:597020/100‑1 (MQ=255)

                                                                             tATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGa                       >  2:3551571/1‑100 (MQ=255)

                                                                              aTCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGAt                      >  2:663493/1‑100 (MQ=255)

                                                                               tCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATa                     <  1:3343500/100‑1 (MQ=255)

                                                                                  tgctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATg                  >  2:473428/1‑100 (MQ=255)

                                                                                    ctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt                >  2:165802/1‑100 (MQ=255)

                                                                                        cATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTGCGATAATGCTGAtt            >  1:2548751/1‑100 (MQ=255)

                                                                                         aTTGCAAAGGAGAATACTATGTTGAAATCCCCCCTGATCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTc           >  1:2491172/1‑100 (MQ=255)

                                                                                         aTTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTc           >  1:259597/1‑100 (MQ=255)

                                                                                         aTTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTc           <  2:1512859/100‑1 (MQ=255)

                                                                                          ttGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg          <  1:1917659/100‑1 (MQ=255)

                                                                                          ttGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg          <  1:100342/100‑1 (MQ=255)

                                                                                            gCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGc        <  2:6556/100‑1 (MQ=255)

                                                                                             cAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa       <  1:998533/100‑1 (MQ=255)

                                                                                               aaGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAgg     <  2:1656266/100‑1 (MQ=255)

                                                                                               aaGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAgg     <  1:1178928/100‑1 (MQ=255)

                                                                                                aGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt    >  1:409061/1‑100 (MQ=255)

                                                                                                 ggAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg   >  2:377800/1‑100 (MQ=255)

                                                                                                 ggAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg   <  2:335586/100‑1 (MQ=255)

                                                                                                  gagaAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGa  >  1:1146499/1‑100 (MQ=255)

AGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGA  >  NC_000913/4638071‑4638268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.