BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1040547 =	NA (NA)	13 (0.110)	3/158	NT	NA	noncoding (5/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	1040579 =	NA (NA)	13 (0.110)	3/158	NT	NA	intergenic (+42/‑38)	cbdX/appA	putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

Only 100 of 150 total aligned reads displayed.

TGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCA  >  NC_000913/1040482‑1040676

tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                 <  1:1163443/100‑1 (MQ=255)

tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                 >  1:1720346/1‑100 (MQ=255)

tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                 <  2:369318/100‑1 (MQ=255)

taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                 >  1:2700094‑M1/66‑100 (MQ=255)

   gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                              >  2:2396044/1‑100 (MQ=255)

    ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                                                             <  2:865871/100‑1 (MQ=255)

     tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata                                                                                            >  1:2915616/1‑100 (MQ=255)

     tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata                                                                                            >  2:1636511/1‑100 (MQ=255)

     ncGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCATCTGACAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCGATCaata                                                                                            >  1:2003775/2‑100 (MQ=255)

       gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                                                          <  2:161613/100‑1 (MQ=255)

       gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                                                          <  2:2088827/100‑1 (MQ=255)

            ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                     >  1:482839/1‑100 (MQ=255)

            ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                     <  1:2008701/100‑1 (MQ=255)

               cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                                                  >  2:3137963/1‑100 (MQ=255)

                 cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATg                                                                                >  1:3224158/1‑100 (MQ=255)

                    gtgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaa                                                                             >  2:1264102/1‑100 (MQ=255)

                     tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                            >  2:3569096/1‑100 (MQ=255)

                     tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                            >  2:2798537/1‑100 (MQ=255)

                      gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg                                                                           >  2:765785/1‑100 (MQ=255)

                      gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg                                                                           >  2:2414119/1‑100 (MQ=255)

                       ttGGTATTGCTGGAGCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGc                                                                          <  1:3409745/100‑1 (MQ=255)

                        tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                                                         <  2:335153/100‑1 (MQ=255)

                        tGGTATGCCTGTACCCGCTTCGGAAAAGTTAACGAACGTAGGCCTGATGCGGTGCATTAGCATAGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                                                         <  1:1063171/100‑1 (MQ=255)

                         ggTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCgg                                                                        <  1:3569068/100‑1 (MQ=255)

                         ggTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCAGCGCATCAGGCAATCAATAATGTCGGATATGAAAAGCg                                                                         <  1:3461254/99‑1 (MQ=255)

                          gTATGTCTGGACCCGCGTCTGAAAAATTGCCCAGCGTGGTCTGGATGCTGCGCATTCGGATCGCATCAGGCAAGCACTAAGGTCAGATATGAAAAGCGGa                                                                       <  1:3410449/100‑1 (MQ=255)

                           tagggCTGGTCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                                                      <  2:158387/97‑1 (MQ=255)

                            aTGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaaa                                                                     >  1:113200/1‑100 (MQ=255)

                             tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                                                    <  1:1378914/100‑1 (MQ=255)

                              ggCTGGGCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                   <  1:754413/100‑1 (MQ=255)

                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                   >  2:2958304/1‑100 (MQ=255)

                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                   >  1:790921/1‑100 (MQ=255)

                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                   <  2:608180/100‑1 (MQ=255)

                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                   <  1:1983782/100‑1 (MQ=255)

                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                   <  1:2831644/100‑1 (MQ=255)

                               gCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat                                                                  >  1:856353/1‑100 (MQ=255)

                                ctcgACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat                                                                  <  2:3544924/96‑1 (MQ=255)

                                  ggACCAGCGTCTGAAAAGTTAACGAACGTATGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                                               <  1:708064/100‑1 (MQ=255)

                                   gACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCg                                                              <  2:1353838/100‑1 (MQ=255)

                                    aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                                                             >  1:891499/1‑100 (MQ=255)

                                     cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                                                             >  1:2932080/1‑99 (MQ=255)

                                      ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATg                                                           <  1:1524274/100‑1 (MQ=255)

                                      ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGAATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATg                                                           <  2:956835/100‑1 (MQ=255)

                                       cgcgTCTGAAAAGTTAACGAGCGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa                                                          >  1:2282380/1‑100 (MQ=255)

                                       cgcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa                                                          >  2:447358/1‑100 (MQ=255)

                                         cgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaaa                                                        >  2:2081799/1‑100 (MQ=255)

                                         cgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaaa                                                        <  2:3627133/100‑1 (MQ=255)

                                          gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAg                                                       >  2:2551463/1‑100 (MQ=255)

                                          gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAg                                                       <  2:1358974/100‑1 (MQ=255)

                                          gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAg                                                       <  2:3712288/100‑1 (MQ=255)

                                           tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGc                                                      <  2:482841/100‑1 (MQ=255)

                                             tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                    <  2:1809578/100‑1 (MQ=255)

                                             tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                    >  1:2568677/1‑100 (MQ=255)

                                             tGAAAAGTTAACGAACGTAGACCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                    >  1:462075/1‑100 (MQ=255)

                                              gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                    >  1:482709/1‑99 (MQ=255)

                                               aaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGagc                                                  >  2:549855/1‑98 (MQ=255)

                                                 aaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCtt                                                <  2:2282391/100‑1 (MQ=255)

                                                     tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                            >  1:3208362/1‑100 (MQ=255)

                                                        cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCa                                         >  2:3040461/1‑100 (MQ=255)

                                                         gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt                                        <  1:1107635/100‑1 (MQ=255)

                                                         gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGAGATcggaagagcac                                        >  2:3387347/1‑90 (MQ=255)

                                                             gTAGGGCTGATGCGGCGCAGTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGAGGAAAGCGATCTTAATCCCAttt                                      <  1:1851061/98‑1 (MQ=255)

                                                             gTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttttt                                    <  1:2407647/100‑1 (MQ=255)

                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                 >  2:3353213/1‑100 (MQ=255)

                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                 <  2:780047/100‑1 (MQ=255)

                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                 >  2:2481337/1‑100 (MQ=255)

                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                 <  2:2248396/100‑1 (MQ=255)

                                                                 gcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                >  1:476399‑M2/33‑100 (MQ=255)

                                                                 gcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                >  2:2114152‑M2/33‑100 (MQ=255)

                                                                 gcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                >  1:2711124‑M2/33‑100 (MQ=255)

                                                                 GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                <  1:787312‑M1/100‑1 (MQ=255)

                                                                 GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                <  1:3480409‑M1/100‑1 (MQ=255)

                                                                 GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                 <  1:1500225‑M1/99‑1 (MQ=255)

                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGTTGAAAGAGATCTTAATCCCATTTTTa                                   >  1:2318309‑M2/32‑96 (MQ=255)

                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                               >  1:896238‑M2/32‑100 (MQ=255)

                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                               >  2:1953831‑M2/32‑100 (MQ=255)

                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                               >  2:3490544‑M2/32‑100 (MQ=255)

                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                >  2:2034457‑M2/32‑99 (MQ=255)

                                                                  CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                               <  2:2572459‑M1/100‑1 (MQ=255)

                                                                  CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                               <  2:1287013‑M1/100‑1 (MQ=255)

                                                                  CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                               <  2:1770044‑M1/100‑1 (MQ=255)

                                                                   CTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                              >  2:749552‑M1/1‑100 (MQ=255)

                                                                   CTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                              >  2:2160038‑M1/1‑100 (MQ=255)

                                                                     GATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttc                            >  2:2465803‑M1/1‑100 (MQ=255)

                                                                      ATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttct                           >  1:3328016‑M1/1‑100 (MQ=255)

                                                                      ATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttct                           >  2:3479498‑M1/1‑100 (MQ=255)

                                                                        GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGa                         <  2:825315‑M1/100‑1 (MQ=255)

                                                                          GGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGAtt                       <  1:1753883‑M1/100‑1 (MQ=255)

                                                                           gcgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTGTATCTCTTCTGAt                        >  1:1983314/1‑98 (MQ=255)

                                                                            cgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTcc                     <  1:544960/100‑1 (MQ=255)

                                                                              cATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGTAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGt                   <  1:2461746/100‑1 (MQ=255)

                                                                               aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGtt                  <  1:1394617/100‑1 (MQ=255)

                                                                                 tAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTaa                >  2:1745450/1‑100 (MQ=255)

                                                                                   gcatcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAcc              >  2:3142322/1‑100 (MQ=255)

                                                                                    catcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAACGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAccc             <  1:596944/100‑1 (MQ=255)

                                                                                      tcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCg           <  1:1746977/100‑1 (MQ=255)

                                                                                       cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGc          <  2:2717606‑M2/90‑1 (MQ=255)

                                                                                         catcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACACCGCaa        >  1:916364‑M2/9‑100 (MQ=255)

                                                                                              ggCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGGAAGCGATCGTAATGCCATTTATATCTCAACTGATTCCGGTAACTCCGCaaattgc   >  1:3166712/1‑95 (MQ=255)

                                                                                               gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTGTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCa  >  1:360853‑M2/3‑100 (MQ=255)

TGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCA  >  NC_000913/1040482‑1040676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.