| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1269130 = | NA (NA) | 9 (0.070) | 4/166 | NT | 17.7% | intergenic (+111/+38) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | NC_000913 | 1269154 = | 45 (0.340) | intergenic (+135/+14) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
CGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCA > NC_000913/1269056‑1269253 | ctgatcctggcggaaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcg > 2:2535723‑M2/99‑100 (MQ=255)ccgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcg < 2:3222359‑M2/2‑1 (MQ=255)cGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg > 1:1041729/1‑100 (MQ=255) gTTAAGACTTTTTTTATTTTTTTTGGATACAAAAAAGGCCGCAGACTGTTACCCCTGCGACCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 1:1120278/1‑98 (MQ=14) cgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:2006211‑M2/3‑1 (MQ=255) ttAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGcc < 1:843977/100‑1 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc > 2:859771‑M2/97‑100 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc > 2:2952924‑M2/97‑100 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 2:2952284‑M2/4‑1 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 2:266541‑M2/4‑1 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc > 2:2216660‑M2/97‑100 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 2:2130484‑M2/4‑1 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc > 1:3352581‑M2/97‑100 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggagaaaacaggcgtcaggctgccgtgatggcaatatgCGcc > 1:2626952‑M2/97‑100 (MQ=255) attctggcgggaattattaccgtagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:777343‑M2/3‑1 (MQ=255) atcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:2612855‑M2/4‑1 (MQ=255) atcctggcgggaattattaccgcagcgattgtcagctgggggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGccc < 2:1184705‑M2/5‑1 (MQ=255) agcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGccc < 2:307531‑M2/5‑1 (MQ=255) tcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg < 1:251945‑M2/6‑1 (MQ=255) tcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg < 2:806203‑M2/6‑1 (MQ=255) tcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg < 1:99471‑M2/6‑1 (MQ=255) aaGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg > 2:2991896/1‑100 (MQ=255) aGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGt > 2:457281/1‑100 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg > 1:2374437/1‑98 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGTCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATAACGGCAGCCTGACGCCCGttt > 1:2434923/1‑100 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGttt < 2:1904283/100‑1 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGttt < 1:1006144/100‑1 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGttt < 1:1421077/100‑1 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGttt > 2:2491346/1‑100 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGTCTGTTACCCCTGCGGCCGGTTTCGGGCGCCGGTTGTCATCACGGCGGCCTGACGCCCGttt > 1:3222513/1‑99 (MQ=18) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGtttt > 2:1866888/1‑100 (MQ=255) cTTTTTTCATGGGTGCCGGAGACAAAAAAGGCCGCAGGCTGTTACCTCTGAGGCCGGTTTCGGGAGCATATTGCCATCACGGCAGCCTGACGCCCGtttt > 1:705946/1‑100 (MQ=17) tttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAcc < 2:615218/100‑1 (MQ=255) tttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAcc < 2:1116419/100‑1 (MQ=255) tttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAcc < 2:1172861/100‑1 (MQ=255) tttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAcc > 2:1212334/1‑100 (MQ=255) tCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCtt < 2:2814509/100‑1 (MQ=255) tCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCtt < 1:2963492/100‑1 (MQ=255) cATGGGTGCCGGATACAAACAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTa < 1:3333695/100‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTAc < 2:3559206/100‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTAc < 2:3437737/100‑1 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGGCGCCCGTTTTCACCTTACt > 2:1070468/1‑100 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACt > 1:1344623/1‑100 (MQ=255) gggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACtt > 2:1472892/1‑100 (MQ=255) gctggATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg > 2:209506/4‑100 (MQ=255) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg > 1:699952/1‑100 (MQ=255) ccGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGt > 1:1233/1‑100 (MQ=40) ccGGATACAAAAAAGGCCGCAGACTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGGCCCCCGTTTTCACCTTACTTCCg > 1:2167486/1‑98 (MQ=255) cGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCTGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGtt < 1:1124265/100‑1 (MQ=255) cGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGtt > 2:3310690/1‑100 (MQ=40) ggATACAAAAAAGGCCGCAGGCTGTTACCCCTGCTGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg < 1:892617/97‑1 (MQ=255) ggATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGtt < 1:1611363/99‑1 (MQ=38) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACg < 2:1304953/100‑1 (MQ=35) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACg < 2:674828/100‑1 (MQ=35) aCAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcc < 1:1472887/100‑1 (MQ=33) aCAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcc > 2:2137227/1‑100 (MQ=33) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 1:652482/1‑100 (MQ=32) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 2:1993507/1‑100 (MQ=33) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 2:2782604/1‑100 (MQ=33) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 1:1445901/1‑100 (MQ=33) attgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGcca > 2:1208226‑M2/69‑100 (MQ=255) aaaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccac > 1:896336/1‑100 (MQ=33) aaaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccac > 2:599602/1‑100 (MQ=32) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccacc > 1:1296136/1‑100 (MQ=32) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccacc > 2:2640471/1‑100 (MQ=32) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAg > 2:718939/1‑100 (MQ=32) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGTCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCt < 2:1338843/100‑1 (MQ=11) aggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTc > 2:2952845‑M2/40‑100 (MQ=255) tgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCg > 1:374089‑M2/37‑100 (MQ=255) tgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCg > 2:2736805‑M2/37‑100 (MQ=255) acgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAgg > 1:2041978‑M2/32‑100 (MQ=255) acgggcgtcaggctgccgtgatggcaatatgCGCCCG‑TTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGa > 2:3641051‑M2/32‑100 (MQ=255) cgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGa > 2:758087‑M2/31‑100 (MQ=255) cgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGa > 1:1726669‑M2/31‑100 (MQ=255) ggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGAt > 2:3619047‑M2/29‑99 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCa < 2:1387328‑M2/100‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCa < 1:904172‑M2/100‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCa < 2:3240530‑M2/100‑1 (MQ=255) | CGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCA > NC_000913/1269056‑1269253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |