New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304654 =	NA (NA)	12 (0.100)	8/164	NT	100%	noncoding (238/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	2304670 =	0 (0.000)					noncoding (254/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAA  >  NC_000913/2304571‑2304768                                                                                                    |                                                                                                   gCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCa                                                                                                    >  1:171926/1‑100 (MQ=31)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                   >  2:104183‑M2/99‑100 (MQ=255)  cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                                                                                   >  2:1830530/1‑100 (MQ=11)  cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                                                                                   >  2:185200/1‑100 (MQ=11)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                  >  1:718789‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                  <  2:1617243‑M2/3‑1 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                  >  1:444551‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                  >  1:3727323‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                  >  1:1834393‑M2/98‑100 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                 <  2:2261725‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                 <  2:158954‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                 <  2:3543302‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                 <  2:2548293‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttagatgtcggatgcggcctaaccgccttATc                                                                                                  >  1:181492‑M2/97‑99 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcggcagcggcgcatgaggcaaccggcgtgggctttagatgtcggatgcggcgttaccgccttATc                                                                                                  >  2:491309‑M2/96‑98 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                >  2:2496692‑M2/96‑100 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                >  2:751851‑M2/96‑100 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                <  2:3715828‑M2/5‑1 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                >  2:753362‑M2/96‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                <  2:636320‑M2/5‑1 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                >  2:1531774‑M2/95‑99 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                               >  2:1243493‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                               >  2:1336620‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctggggcgttagatgtcggatgcggcgtgaccgccttATCCg                                                                                                >  1:2226787‑M2/95‑99 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                              <  2:1834401‑M2/7‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                              <  1:3275407‑M2/7‑1 (MQ=255)                                                                   ggcgttagatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAcc                                   >  2:2726136‑M2/34‑99 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                           >  2:161304‑M2/27‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                           >  1:827864‑M2/27‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCAACATCTAACACCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa                            >  1:2503242‑M2/27‑99 (MQ=255)                                                                            tgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGTAg                          >  2:2958240‑M2/25‑99 (MQ=255)                                                                            tgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGt                         <  2:827869‑M2/76‑1 (MQ=255)                                                                             gtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTAATCAGGCCTACACCGCTGTGAAGTg                        >  2:3701384‑M2/24‑100 (MQ=255)                                                                              tcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc                       >  1:1050205‑M2/23‑100 (MQ=255)                                                                               cggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCt                      >  2:629667‑M2/22‑100 (MQ=255)                                                                                ggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGTGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                     >  1:433795‑M2/21‑100 (MQ=255)                                                                                ggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGTGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTc                     >  1:431814‑M2/21‑100 (MQ=255)                                                                                   tgcggcgtaaccgccttATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCAc                  >  2:3403563‑M2/18‑100 (MQ=255)                                                                                                    ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTCCACCGCTGCGAAGTGCTCCACCCCGTAGGTTGGATaa  >  1:2763258‑M2/1‑99 (MQ=255)                                                                                                    |                                                                                                   GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAA  >  NC_000913/2304571‑2304768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.