| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,970 | G→A | 25.1% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 25.1% | 422.0 / 135.7 | 207 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (66/89); new base A (47/5); total (113/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.69e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.06e-01 | |||||||||||
Only 100 of 217 total aligned reads displayed.
GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705873‑3706069 | gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCAAAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:3563220/1‑100 (MQ=255) ggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg > 2:655458/1‑100 (MQ=255) ggAATGAAGTATAGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg > 2:2461609/1‑100 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc > 2:2154484/1‑100 (MQ=255) aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt > 2:3315026/1‑100 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt > 2:427861/1‑100 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 1:280471/100‑1 (MQ=255) tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTAACAAAGTGCGATTTGTTTATGCCGGATGCGGCGTTAACGc > 1:836643/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:3643778/100‑1 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:2523573/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:2869453/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:982211/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:3154222/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:2139904/100‑1 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:1022670/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCGCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1093105/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:23952/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:3016339/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:2066277/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1998442/1‑100 (MQ=255) ggATGGCGCTACACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTCTACGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:2461596/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:727678/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:775701/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:382467/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:3000303/100‑3 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:1302352/97‑3 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑aa < 2:1804473/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑aa > 2:3261348/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATc > 2:1201301/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACATATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCg < 2:505950/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGACCGCTGCGACTTTAACGCCTTCTCCGCCAT‑AC‑AAAAACg > 1:121753/1‑100 (MQ=21) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTg > 1:2574668/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTg < 2:1893263/100‑1 (MQ=255) cGCAGAGGCACAGCACCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATACCGGATGCGGCGTTAACGCCTTATCCGACCT‑AC‑AAAATCGTg > 1:1348269/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGc < 2:2958851/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGTCCT‑AC‑AAAATCGTGCa > 1:3459258/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCaaa > 1:2307030/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAAt < 1:2733075/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAAtt < 1:442051/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCaa > 2:3575216/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATAc < 1:1746054/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAt < 2:2264695/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAt > 1:1187350/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAtt > 1:112978/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCAGGATGTGGCGTTAACTCTTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAtt < 1:883397/99‑1 (MQ=18) cgatcttataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGc < 2:1431508/94‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAg < 2:3048563/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGa > 1:3203892/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑Att‑‑‑t < 1:3570604/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCg < 2:1187356/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCg < 1:2832051/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGt > 2:3621596/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTa < 1:3621568/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTa < 2:2976643/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTa > 2:414958/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTg > 2:282792/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGa > 1:2021679/1‑100 (MQ=255) aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAg > 2:3732283/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGc < 1:1249325/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGc < 1:1661067/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGc < 1:1894304/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCgg > 2:2369793/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGCCCTGATAAGCGGa < 2:2538387/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑CC‑ACAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAg < 1:308987/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAg > 2:3616599/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAgcg > 1:372536/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAgcg > 1:1975033/1‑100 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAgcgc > 1:2856861/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCa > 1:2205716/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑ACAAAAATCTTGCCAATTCAATATATTGCAGG‑ACC‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATc > 2:251765/7‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 2:1916605/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 2:2665227/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 2:3181627/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 1:1201295/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑‑AAATCATGCAAATCCAAAATATTGCAGG‑AGT‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAg > 1:1468470/6‑100 (MQ=21) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:1171033/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGCAGAGATT‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAg < 1:2937904/96‑1 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGCAGAGATT‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2937924/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAC‑AAAAACCTGCAAATTCAATATATTGCAGG‑ATA‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCa > 2:1528971/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑AC‑AAAAACCTGCAAATTCAATATATTGCAGG‑ATA‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAg > 1:494504/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TTA‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3339126/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACCTGCAAATTCAATATATTGCAGG‑ATA‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1036689/4‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTGCAGT‑TTA‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:761071/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑AC‑AAAAACATGCAAATTCAATAGATTGCAGA‑GAT‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2357275/3‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑A‑ATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1584065/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCATGAAAATTCAATACATTGCAAG‑ATT‑‑‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2696508/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGCAGAGATT‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1510802/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:17402/1‑100 (MQ=255) gCCGGATAAGGCGTTCACTCCGCATCCGGCCT‑AC‑AAAAGCACGCAAATTCAATATATTGCAGA‑AAT‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGACaa > 2:177405/1‑99 (MQ=11) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTGCAGG‑ACC‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:3478606/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTGCACC‑ATC‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1096657/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTGCACC‑ATC‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1675406/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACCTTGCTAATTCAATATATTGCAGG‑GAC‑‑‑TATGTAGGCCTGATAAGCATAGCGCATCAGGCag > 2:2581391/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACCTGCAAATTCAATATATTGCAGG‑ATA‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3526736/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGCAGA‑GAT‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2602598/1‑99 (MQ=17) ccGGATAAGGCGTTTACGCCGCATCTGGCCT‑AC‑AAATTCTTCCAAATTCAATATATTGCAGA‑AAT‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1059579/1‑98 (MQ=17) cGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:237122/1‑100 (MQ=255) ggATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 1:1389415/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1847113/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:2951913/100‑1 (MQ=255) | GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGCAGA‑ATT‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705873‑3706069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |