| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 32.4% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 32.4% | 432.2 / 272.4 | 241 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (69/94); new base G (73/5); total (142/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.70e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.92e-01 | |||||||||||
Only 100 of 248 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:2139904/100‑1 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:1022670/1‑100 (MQ=255) gctgcCGGATGACGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1093019/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:3712696/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:2066277/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1998442/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:803558/1‑100 (MQ=255) ggATGGCGCTACACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTCTACGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:2461596/100‑1 (MQ=255) gtGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 2:2910299/2‑100 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:382467/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:3000303/100‑3 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:1302352/97‑3 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑aa < 2:1804473/100‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATc > 2:1201301/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACATATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCg < 2:505950/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCg > 1:774888/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCg < 2:2025669/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTg > 1:2574668/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGc < 2:2958851/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGc < 1:2846191/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGc < 1:1991987/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGTCCT‑AC‑AAAATCGTGCa > 1:3459258/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAAtt < 1:442051/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCaa < 2:3577927/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAAt < 2:401821/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAAt < 1:2910280/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATAc < 1:1746054/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAt > 1:1187763/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAt < 2:2264695/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAtt > 1:112978/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCTCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑g < 1:998186/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At‑t > 2:3153657/1‑100 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At‑t > 1:1888014/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGTGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At‑t‑‑‑t < 2:138914/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At‑t‑‑‑t < 1:3570604/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑g < 2:646015/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑Gt > 2:3621596/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTa < 1:3621568/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTa < 1:1220134/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAg < 1:2373010/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTg > 2:282792/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCAAATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTg < 1:3108082/99‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1156422/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc < 1:1661067/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc > 2:2984976/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg > 1:3081429/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg > 2:2369793/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 2:2601910/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1773930/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:372536/1‑100 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:1291226/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑ACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:251765/7‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:1275269/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:2665227/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:2556385/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:1916605/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1201295/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:500551/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GA‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2562065/6‑100 (MQ=18) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:961340/6‑100 (MQ=17) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1171033/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAC‑AAAAACCTGCAAATTCAATATATTGC‑‑A‑GG‑AT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:1528971/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑AC‑AAAAACCTGCAAATTCAATATATTGC‑‑A‑GG‑AT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:494504/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:2095719/5‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3339126/4‑100 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑TA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3550985/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3307256/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3500583/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑‑AAACCGCGCAAATTCAATATATTGCGGA‑GA‑AA‑A‑‑‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 1:1938436/3‑99 (MQ=21) aTGCCGGATGCGACGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:2447144/1‑100 (MQ=255) ggtcggataaggcgTTCACGCCGCATCCGGCCC‑AC‑AAAGTCTTGCAAAATCAATAAATTGC‑‑AGGA‑AC‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2762599/11‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑‑‑A‑AT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:3188461/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGAT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1510802/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GA‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2698/2‑100 (MQ=17) gaccggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAATTCTTCCAAATTCAATATATTGC‑‑A‑GA‑AA‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3456266/11‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt < 2:3267846/100‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAGTTCGTGCAAATTCAATAAATTGC‑‑A‑‑A‑TA‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 2:2232253/1‑97 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1096657/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1675406/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GA‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2602598/1‑99 (MQ=17) ccggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:746243/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:2325546/9‑98 (MQ=25) ccGGATAAGGCGTTTACGCCGCATCTGGCCT‑AC‑AAATTCTTCCAAATTCAATATATTGC‑‑A‑GA‑AA‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1059579/1‑98 (MQ=17) ccGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:87263/1‑98 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:237122/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1769186/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtat > 1:2271363/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1724518/7‑100 (MQ=18) ggATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 1:1389415/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:774892/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:2951913/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:3567587/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt < 2:1649900/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:1370108/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAGTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2169642/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:2798452/100‑1 (MQ=255) aCGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccagatcggaa > 2:1726952/1‑91 (MQ=255) cGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 1:1441139/100‑1 (MQ=255) gCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:3389178/100‑1 (MQ=255) ccTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:1884261/1‑100 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |