| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 32.4% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 32.4% | 370.8 / 225.7 | 241 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (69/94); new base C (73/5); total (142/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.70e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.66e-01 | |||||||||||
Only 100 of 245 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705886‑3706083 | tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:1022670/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:23952/1‑100 (MQ=255) gctgcCGGATGACGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1093019/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:3712696/1‑100 (MQ=255) ggATGGCGCTACACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTCTACGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:2461596/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:727678/100‑2 (MQ=37) gtGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 2:2910299/2‑100 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:382467/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:3000303/100‑3 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:1302352/97‑3 (MQ=25) cACGCAGAGGCACAGCGCCACCGGGTATACATATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCg < 2:505950/100‑1 (MQ=255) aCGCAGCGCCACAGCGCCACCGGGTCTACAGATTGTTGACAAAGCGCGCATCCGTTTCACCCGATGCGACGTTAACGCCTTATCCCGCCT‑CC‑AACATc > 1:1735371/1‑98 (MQ=16) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGt < 2:1707329/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTg > 1:2574668/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGc < 2:2958851/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGc < 1:2846191/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGTCCT‑AC‑AAAATCGTGCa > 1:3459258/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCa < 2:2011895/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAAt < 2:104045/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAAt < 2:2370798/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAAt < 2:401821/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAAt < 1:2910280/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAt > 1:1187763/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACAtt > 1:112978/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTg > 2:3558869/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCTCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑g < 1:998186/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑g < 1:2811991/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t > 2:3153657/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGTGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t‑‑‑t < 2:138914/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t‑‑‑t < 1:3570604/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑g < 2:646015/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑g < 2:1187769/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑Gt > 2:3621596/1‑100 (MQ=255) gcttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTa > 2:2531750/3‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTa < 1:3621568/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTa < 1:1220134/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAg < 1:2373010/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:2204182/7‑100 (MQ=18) gACAAAGTGCGCTTTGTTTATGCCAAATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTg < 1:3108082/99‑1 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGAt < 1:272825/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1156422/100‑1 (MQ=255) aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATaa < 1:848009/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc > 2:2984976/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg > 1:3081429/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg > 2:3616599/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1773930/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:372536/1‑100 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcgc > 2:1896797/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1435350/100‑1 (MQ=255) ttGTGTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAAGAGTGCTAATTAAATACATTGC‑‑T‑GTAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 1:440247/94‑1 (MQ=17) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:1275269/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1201295/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:500551/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2562065/6‑100 (MQ=18) tgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:1597669/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1171033/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAC‑AAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:1528971/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑AC‑AAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:494504/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:2095719/5‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3339126/4‑100 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2753248/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3307256/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑AAT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3500583/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAA‑A‑‑‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 1:1938436/3‑99 (MQ=21) ggtcggataaggcgTTCACGCCGCATCCGGCCC‑AC‑AAAGTCTTGCAAAATCAATAAATTGC‑‑AGGAAC‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2762599/11‑100 (MQ=18) ggtcggataaggcgTTCACGCCGCATCCGACCC‑AC‑AAAGTCTTGCAAAATCAATAAATTGC‑‑AGGAAC‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1978380/11‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2468600/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑‑‑AAT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:3188461/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCATGAAAATTCAATACATTGC‑‑A‑AGAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2696508/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑AC‑AAGTTCGTGCAAATTCAATAAATTGC‑‑A‑‑ATA‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcga > 2:1880054/2‑98 (MQ=21) gtcggataaggcgTTCACGCCGCATCCGACCC‑AC‑AAAGTCTTGCAAAATCAATAAATTGC‑‑AGGAAC‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1288420/10‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1675406/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACCTTGCTAATTCAATATATTGC‑‑A‑GGGA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 2:2581391/1‑99 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:3334806/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:746243/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:2291139/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:2325546/9‑98 (MQ=25) ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1962587/1‑100 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCTGGCCT‑AC‑AAATTCTTCCAAATTCAATATATTGC‑‑A‑GAAA‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1059579/1‑98 (MQ=17) ccGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑AAT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:87263/1‑98 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:2603850/8‑97 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1769186/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtat > 1:2271363/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1724518/7‑100 (MQ=18) ggATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 1:1389415/100‑1 (MQ=255) gataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAAAGAATCAGGCAgtttt > 2:1362151/6‑100 (MQ=17) aTGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1847113/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:774892/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:1774810/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:2951913/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:3567587/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2109391/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2026018/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2218269/100‑1 (MQ=255) ttAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:3461796/100‑1 (MQ=255) aaCGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATAGGGCATTTTTGCCTTTGCCAt > 2:1604981/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:2246440/100‑1 (MQ=255) cGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 1:1441139/100‑1 (MQ=255) gCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:3389178/100‑1 (MQ=255) tATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt > 1:776253/1‑99 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705886‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |