Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1450CG20.9% 291.0 / 21.2 111intergenic (+128/‑70)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base C (57/30);  new base G (0/23);  total (57/54)
Fisher's exact test for biased strand distribution p-value = 2.14e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 113 total aligned reads displayed.

TCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAG  >  NC_000913/3781046‑3781242
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tcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc                                                                                                     >  1:2397332/1‑100 (MQ=255)
 cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑g                                                                                                   >  1:1430452/1‑100 (MQ=255)
 cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑g                                                                                                   >  2:2798429/1‑100 (MQ=255)
  ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑gg                                                                                                  >  1:2563008/1‑100 (MQ=255)
   cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑gg                                                                                                  >  1:1380855/1‑99 (MQ=255)
    tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑gggg                                                                                                <  2:489140/100‑1 (MQ=255)
    tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑gggg                                                                                                <  2:356830/100‑1 (MQ=255)
    tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑gggg                                                                                                <  1:2078860/100‑1 (MQ=255)
      aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTg                                                                                              <  1:2780562/100‑1 (MQ=255)
       gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGa                                                                                             >  2:2460739/1‑100 (MQ=255)
        ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                            <  2:2397349/100‑1 (MQ=255)
        ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                            <  1:953904/100‑1 (MQ=255)
        ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                            <  1:282000/100‑1 (MQ=255)
         gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTTTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAgg                                                                                           <  1:1927095/100‑1 (MQ=255)
          agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                          <  2:2822037/100‑1 (MQ=255)
          agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                          <  1:2418573/100‑1 (MQ=255)
          agagGGGACCGTTCGGCGCTGTATGTACCCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                          <  2:1647336/100‑1 (MQ=255)
           gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg‑g                                                                                        <  1:1725901/100‑1 (MQ=255)
           gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg‑g                                                                                        <  1:2432115/100‑1 (MQ=255)
            agGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Ga                                                                                       <  1:2924909/100‑1 (MQ=255)
            agGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Ga                                                                                       <  1:322176/100‑1 (MQ=255)
             ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaa                                                                                      >  2:715895/1‑100 (MQ=255)
             ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaa                                                                                      >  2:3519008/1‑100 (MQ=255)
               ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaa                                                                                      >  1:353919/1‑98 (MQ=255)
                gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaaagg                                                                                   <  2:1192564/100‑3 (MQ=255)
                gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAg                                                                                   >  2:2032074/1‑100 (MQ=255)
                  ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGc                                                                                 >  1:362556/1‑100 (MQ=255)
                    gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCg                                                                               >  1:829831/1‑100 (MQ=255)
                       cGGCGCTGTATGTCCTCCCTCCCTCTGAACCGACCCCGCCCTCTTTTTTTCTCCCTCGCCCCCCGGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCAc                                                                            <  2:1901145/100‑1 (MQ=37)
                        ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACt                                                                           >  1:2692677/1‑100 (MQ=255)
                              gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCAc                                                                     >  1:2328598/1‑100 (MQ=255)
                               tatttccccccTCCCCCTGAAACGCCACCGCACTCTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGGCG‑GGGGGGAGGG‑GAAAAGGCCGCACTGCTCAc                                                                     <  1:2546004/91‑1 (MQ=255)
                               tatgtcCCCCCCCCCTCGGAACCGACCCCGCACTCTTTTTTTCCCCCCCGCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCAcc                                                                    <  1:2678430/100‑1 (MQ=255)
                                 tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTCTCTCTCCCCCCCGGGGAGAGGGCC‑GGCGTGAGGG‑GAAAAGGCCGCACTGCTCACCaa                                                                  >  1:1358548/1‑100 (MQ=255)
                                     cTCCCTCACTCTGAAACGCCACCGCACTTTTTTTTTCCCCCGCGCCCCCCCGGGGAGGGGCCG‑GGGGTGAGGG‑AAAAAGGCCGCACTGCTCACCAAtt                                                                <  1:1779008/98‑1 (MQ=255)
                                     cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAAtttt                                                              >  1:3329489/1‑100 (MQ=255)
                                     cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGACGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAAtttt                                                              >  2:1362880/1‑100 (MQ=255)
                                       cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCt                                                            >  2:2794858/1‑100 (MQ=255)
                                       cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCt                                                            >  1:3404249/1‑100 (MQ=255)
                                       cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCt                                                            >  1:1346799/1‑100 (MQ=255)
                                        cctccctcTGAACCGACACCGCACTCTTTTTTTCCCCCTCGCCCCCCCGGGGAGAGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                           <  1:2365003/100‑1 (MQ=38)
                                        cccccctcaGAAACGACCCCGCCCTTTTTTTTCCCCCCCCCCCCCTCCGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                           <  2:2594509/95‑1 (MQ=255)
                                        ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                           >  2:1712645/1‑100 (MQ=255)
                                        ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                           >  2:3364174/1‑100 (MQ=255)
                                        ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                           >  2:458904/1‑100 (MQ=255)
                                        ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                           >  2:850953/1‑100 (MQ=255)
                                         cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                          >  2:2550394/1‑100 (MQ=255)
                                         cTCACTCGAAACCGACACCCCACTTTTTTTTTCCCCCCCCCCCCTCCGGGGAGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                          <  2:1430459/100‑1 (MQ=255)
                                          tCACTCTGAAACGACACCGCACTCTTTTTTTCTTTCTCTCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                         >  1:2080722/1‑100 (MQ=255)
                                          tCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                         >  2:3151553/1‑100 (MQ=255)
                                            aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                       >  2:1027432/1‑100 (MQ=255)
                                                tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                   >  2:1972493/1‑100 (MQ=255)
                                                   aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                >  1:1551667/1‑100 (MQ=255)
                                                     cGACCCCCCCCTCTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGCCC‑GGGGTGAGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                               <  1:1064002/99‑1 (MQ=255)
                                                     cGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                              >  1:1587279/1‑100 (MQ=255)
                                                          cccctcttttttttcCCCCCTCGCCCGCCGGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                          <  2:2223222/91‑1 (MQ=255)
                                                               ctttttttttCCCCCCCCCCCCCCGGGGGAGAGGGCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                    <  2:2638244/97‑1 (MQ=255)
                                                               ctctTTTTTTTCCCCCCCCCCCCGCGGGGGGGGGGCCGGGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                     <  1:3518983/100‑1 (MQ=255)
                                                               ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                    >  2:739994/1‑100 (MQ=255)
                                                               ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                    >  1:1751699/1‑100 (MQ=255)
                                                               ctctTTTTTTCCCCCTCCCCCCCCCGGGGAGAGGCCT‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                    <  1:1676098/100‑1 (MQ=255)
                                                                 ttttttttCTCCCCCCCCCCGCGGGGGGGAGGGCG‑GGGGAGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                   <  1:2649010/98‑1 (MQ=255)
                                                                 ctTTTTTTCTCCCTCCCCCCCCCGGGGAGAGGGCC‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                     <  1:715892/97‑1 (MQ=255)
                                                                  tttttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                 >  2:1074157/1‑100 (MQ=255)
                                                                  tttttttCTCCCGCGCCCCGCCGGGGAGGGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                 <  1:1226801/100‑1 (MQ=255)
                                                                    tttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                >  1:901868/1‑99 (MQ=255)
                                                                    tttttCCCCCCCGCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                               <  2:2563025/100‑1 (MQ=255)
                                                                    tttttCCCCCCCCCCCCCCGGGGGAGGGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                               <  2:2072008/100‑1 (MQ=255)
                                                                     ttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                              >  2:2083238/1‑100 (MQ=255)
                                                                      tttCTCCCTCCCCCCGCGGGGGTGGGGGCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                             <  2:1918595/100‑1 (MQ=255)
                                                                         ctcCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                          >  1:2393514/1‑100 (MQ=255)
                                                                          tcCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                         >  1:3080636/1‑100 (MQ=255)
                                                                           cccgtcccccccCGGGGAGAGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                         <  1:458902/93‑1 (MQ=255)
                                                                           ccccccccccccCGGGGAGGGGCCC‑GGGGGGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGcn                         <  1:850950/93‑2 (MQ=255)
                                                                           cccTCGCCCCTCCGGGGGGGGGGCC‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                        <  1:2095264/100‑1 (MQ=255)
                                                                           cccTCGCCCCTCCGGGGAGGGGGCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                        <  1:1267007/100‑1 (MQ=255)
                                                                           cccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                        >  2:3384523/1‑100 (MQ=255)
                                                                            ccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                       >  1:2097412/1‑100 (MQ=255)
                                                                            ccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                       >  1:2228641/1‑100 (MQ=255)
                                                                             cccgccgcCCCGGGGAGAGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                      <  1:789087/98‑1 (MQ=255)
                                                                             ccccccccccGGGGGAGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                      <  2:1346805/96‑1 (MQ=255)
                                                                             cTCCCCCCCCGGGGGGGAGGGCG‑GGGGTGAGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                      <  1:1737514/100‑1 (MQ=255)
                                                                              tCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                     >  2:2558071/1‑100 (MQ=255)
                                                                              tCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                     >  1:721297/1‑100 (MQ=255)
                                                                                 ccccggaggggCGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                  >  2:1965834/8‑100 (MQ=255)
                                                                                  cccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                 >  2:545407/1‑100 (MQ=255)
                                                                                   ccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATcat                >  2:1186702/1‑98 (MQ=255)
                                                                                   ccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                >  2:470350/1‑100 (MQ=255)
                                                                                    cccgggggggAGGCCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                <  2:3234280/95‑1 (MQ=255)
                                                                                      ccGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt             >  1:1145968/1‑100 (MQ=255)
                                                                                       cGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt            >  1:381366/1‑100 (MQ=255)
                                                                                        ggggggAGGGCC‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc              <  1:2798409/97‑1 (MQ=255)
                                                                                         gcgtggcggCC‑GGGGTGGGGGCCAAAAGGCCCCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt           <  2:3222970/93‑1 (MQ=255)
                                                                                          ggAGAGGCCC‑GGGGTGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc         <  2:3014977/100‑1 (MQ=255)
                                                                                           gggggggCC‑GGGGTGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc         <  2:113344/95‑1 (MQ=255)
                                                                                             gggggCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa      <  2:2080738/98‑1 (MQ=255)
                                                                                             gagGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa      <  2:1145972/100‑1 (MQ=255)
                                                                                               gggCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc    <  1:1712635/100‑1 (MQ=255)
                                                                                               gggCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc     >  2:2407755/1‑99 (MQ=255)
                                                                                                  cc‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc         <  1:2042498/92‑1 (MQ=255)
                                                                                                   |                                                                                                   
TCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAG  >  NC_000913/3781046‑3781242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑