Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,781,1520AG22.9% 191.6 / 23.2 105intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (52/29);  new base G (0/24);  total (52/53)
Fisher's exact test for biased strand distribution p-value = 4.01e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 106 total aligned reads displayed.

GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250
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gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGa                                                                                                     >  2:2460739/1‑100 (MQ=255)
 ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                                    <  1:282000/100‑1 (MQ=255)
 ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                                    <  2:2397349/100‑1 (MQ=255)
 ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                                    <  1:953904/100‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                                  <  1:2418573/100‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                                  <  2:2822037/100‑1 (MQ=255)
   agagGGGACCGTTCGGCGCTGTATGTACCCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                                  <  2:1647336/100‑1 (MQ=255)
    gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg‑g                                                                                                <  1:2432115/100‑1 (MQ=255)
    gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg‑g                                                                                                <  1:1725901/100‑1 (MQ=255)
     agGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Ga                                                                                               <  1:2924909/100‑1 (MQ=255)
     agGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Ga                                                                                               <  1:322176/100‑1 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaa                                                                                              >  2:3519008/1‑100 (MQ=255)
      ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaa                                                                                              >  2:715895/1‑100 (MQ=255)
        ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaa                                                                                              >  1:353919/1‑98 (MQ=255)
         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑Gaaagg                                                                                           <  2:1192564/100‑3 (MQ=255)
         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAg                                                                                           <  2:369757/100‑1 (MQ=255)
         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAg                                                                                           >  2:2032074/1‑100 (MQ=255)
           ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGc                                                                                         >  1:362556/1‑100 (MQ=255)
             gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCg                                                                                       >  2:1011985/1‑100 (MQ=255)
                cGGCGCTGTATGTCCTCCCTCCCTCTGAACCGACCCCGCCCTCTTTTTTTCTCCCTCGCCCCCCGGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCAc                                                                                    <  2:1901145/100‑1 (MQ=37)
                 ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACt                                                                                   >  1:2692677/1‑100 (MQ=255)
                      tgtatgtgCCCCCTCCCTCGGAAACCAGCCCGCGCTTTGTTTTCCTCCACCGCCCCTCCGGGGACGGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCa                                                                              <  1:2362020/100‑1 (MQ=255)
                       gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCAc                                                                             >  1:2328598/1‑100 (MQ=255)
                        tatttccccccTCCCCCTGAAACGCCACCGCACTCTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGGCG‑GGGGGGAGGG‑GAAAAGGCCGCACTGCTCAc                                                                             <  1:2546004/91‑1 (MQ=255)
                        tatgtcCCCCCCCCCTCGGAACCGACCCCGCACTCTTTTTTTCCCCCCCGCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCAcc                                                                            <  1:2678430/100‑1 (MQ=255)
                         ttttcctccctccCTCTAAACCGACCCCGCGCTCTTTTTTTCTCCCCCCCCCCTCGGGGGAGGGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCAc                                                                             <  1:3215855/93‑1 (MQ=255)
                          tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTCTCTCTCCCCCCCGGGGAGAGGGCC‑GGCGTGAGGG‑GAAAAGGCCGCACTGCTCACCaa                                                                          >  1:1358548/1‑100 (MQ=255)
                              cTCCCTCACTCTGAAACGCCACCGCACTTTTTTTTTCCCCCGCGCCCCCCCGGGGAGGGGCCG‑GGGGTGAGGG‑AAAAAGGCCGCACTGCTCACCAAtt                                                                        <  1:1779008/98‑1 (MQ=255)
                              cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAAtttt                                                                      >  1:3329489/1‑100 (MQ=255)
                              cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGACGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAAtttt                                                                      >  2:1362880/1‑100 (MQ=255)
                                cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  1:1346799/1‑100 (MQ=255)
                                cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  1:3404249/1‑100 (MQ=255)
                                 cctccctcTGAACCGACACCGCACTCTTTTTTTCCCCCTCGCCCCCCCGGGGAGAGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   <  1:2365003/100‑1 (MQ=38)
                                 cccccctcaGAAACGACCCCGCCCTTTTTTTTCCCCCCCCCCCCCTCCGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   <  2:2594509/95‑1 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  2:850953/1‑100 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  2:1712645/1‑100 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  2:3364174/1‑100 (MQ=255)
                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  2:458904/1‑100 (MQ=255)
                                  cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                  >  2:2550394/1‑100 (MQ=255)
                                  cTCACTCGAAACCGACACCCCACTTTTTTTTTCCCCCCCCCCCCTCCGGGGAGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                  <  2:1430459/100‑1 (MQ=255)
                                   tCACTCTGAAACGACACCGCACTCTTTTTTTCTTTCTCTCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                 >  1:2080722/1‑100 (MQ=255)
                                   tCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                 >  2:3151553/1‑100 (MQ=255)
                                     aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                               >  2:1027432/1‑100 (MQ=255)
                                      ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                              >  2:206016/1‑100 (MQ=255)
                                         tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                           >  2:1972493/1‑100 (MQ=255)
                                            aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                        >  1:1551667/1‑100 (MQ=255)
                                              cGACCCCCCCCTCTTTTTTTCCCCCCCCCCCCCCGGGGGAGGGGCCC‑GGGGTGAGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                       <  1:1064002/99‑1 (MQ=255)
                                              cGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                                      >  1:1587279/1‑100 (MQ=255)
                                                   cccctcttttttttcCCCCCTCGCCCGCCGGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  <  2:2223222/91‑1 (MQ=255)
                                                   ccGCATTCTTTTTTCCCCCCCCCCCCCCCGGGGGAGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt                                                 <  2:2465446/100‑1 (MQ=255)
                                                        ctttttttttCCCCCCCCCCCCCCGGGGGAGAGGGCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  2:2638244/97‑1 (MQ=255)
                                                        ctctTTTTTTTCCCCCCCCCCCCGCGGGGGGGGGGCCGGGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                             <  1:3518983/100‑1 (MQ=255)
                                                        ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            >  2:739994/1‑100 (MQ=255)
                                                        ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            >  1:1751699/1‑100 (MQ=255)
                                                        ctctTTTTTTCCCCCTCCCCCCCCCGGGGAGAGGCCT‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  1:1676098/100‑1 (MQ=255)
                                                          ttttttttCTCCCCCCCCCCGCGGGGGGGAGGGCG‑GGGGAGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                           <  1:2649010/98‑1 (MQ=255)
                                                          ctTTTTTTCTCCCTCCCCCCCCCGGGGAGAGGGCC‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                             <  1:715892/97‑1 (MQ=255)
                                                           tttttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         >  2:1074157/1‑100 (MQ=255)
                                                           tttttttCTCCCGCGCCCCGCCGGGGAGGGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         <  1:1226801/100‑1 (MQ=255)
                                                             tttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                        >  1:901868/1‑99 (MQ=255)
                                                             tttttCCCCCCCGCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                       <  2:2563025/100‑1 (MQ=255)
                                                             tttttCCCCCCCCCCCCCCGGGGGAGGGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                       <  2:2072008/100‑1 (MQ=255)
                                                              ttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                      >  2:2083238/1‑100 (MQ=255)
                                                                  ctcCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                  >  1:1869747/1‑100 (MQ=255)
                                                                  ctcCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                  >  1:2393514/1‑100 (MQ=255)
                                                                   tcCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 >  1:3080636/1‑100 (MQ=255)
                                                                    cccgtcccccccCGGGGAGAGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                 <  1:458902/93‑1 (MQ=255)
                                                                    ccccccccccccCGGGGAGGGGCCC‑GGGGGGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGcn                                 <  1:850950/93‑2 (MQ=255)
                                                                    cccTCGCCCCTCCGGGGGGGGGGCC‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                <  1:2095264/100‑1 (MQ=255)
                                                                    cccTCGCCCCTCCGGGGAGGGGGCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                <  1:1267007/100‑1 (MQ=255)
                                                                    cccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  2:3384523/1‑100 (MQ=255)
                                                                     ccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  2:2893615/1‑100 (MQ=255)
                                                                     ccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  1:2097412/1‑100 (MQ=255)
                                                                     ccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  1:2228641/1‑100 (MQ=255)
                                                                      cccgccgcCCCGGGGAGAGGGCG‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                              <  1:789087/98‑1 (MQ=255)
                                                                      ccccccccccGGGGGAGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                              <  2:1346805/96‑1 (MQ=255)
                                                                      cTCCCCCCCCGGGGGGGAGGGCG‑GGGGTGAGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                              <  1:1737514/100‑1 (MQ=255)
                                                                       tCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             >  1:721297/1‑100 (MQ=255)
                                                                       tCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             >  2:2558071/1‑100 (MQ=255)
                                                                         gCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                           >  1:623287/1‑100 (MQ=255)
                                                                          ccccggaggggCGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                          >  2:1965834/8‑100 (MQ=255)
                                                                           cccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                         >  2:545407/1‑100 (MQ=255)
                                                                            ccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATcat                        >  2:1186702/1‑98 (MQ=255)
                                                                            ccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        >  2:470350/1‑100 (MQ=255)
                                                                             cccgggggggAGGCCG‑GGGGTGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                        <  2:3234280/95‑1 (MQ=255)
                                                                               ccGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt                     >  1:1145968/1‑100 (MQ=255)
                                                                                cGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                    >  1:381366/1‑100 (MQ=255)
                                                                                 ggggAGGGGGCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt                   <  1:2575168/100‑1 (MQ=255)
                                                                                  gcgtggcggCC‑GGGGTGGGGGCCAAAAGGCCCCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt                   <  2:3222970/93‑1 (MQ=255)
                                                                                   ggAGAGGCCC‑GGGGTGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  2:3014977/100‑1 (MQ=255)
                                                                                    gggggggCC‑GGGGTGGGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  2:113344/95‑1 (MQ=255)
                                                                                     agagGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa               >  1:1436218/1‑100 (MQ=255)
                                                                                      gggggCG‑GGGGGGGGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa              <  2:2080738/98‑1 (MQ=255)
                                                                                      gagGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa              <  2:1145972/100‑1 (MQ=255)
                                                                                        gggCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            <  1:1712635/100‑1 (MQ=255)
                                                                                        gggCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc             >  2:2407755/1‑99 (MQ=255)
                                                                                          gCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg          >  2:1374862/1‑100 (MQ=255)
                                                                                           cc‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  1:2042498/92‑1 (MQ=255)
                                                                                               gggTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt      <  1:2460723/100‑1 (MQ=255)
                                                                                                   gAGGG‑AAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg  <  1:1094125/100‑1 (MQ=255)
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GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑GAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑