New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3539757 =	NA (NA)	7 (0.070)	6/160	NT	NA	noncoding (12/34 nt)	REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	3539792 =	NA (NA)					intergenic (+86/‑371)	yhgF/feoA	putative transcriptional accessory protein/ferrous iron transporter, protein A

GCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3539863‑3539757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  >  NC_000913/3539792‑3539889                                                                                                                                                                                                               GCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGA                                                                                                           <  2:3088518/100‑1  CCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAA                                                                                                          <  2:1648057/100‑1  CCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAA                                                                                                          >  1:2330623/1‑100   CGGAGTATGTTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTAAGGCAAGGCGTTCGTTGCCAGATTCGGCGTG                                                                                                            >  2:3087179/1‑97   CGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAAC                                                                                                         <  2:943879/100‑1   CGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAAC                                                                                                         >  2:544578/1‑100    GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        <  1:1331325/100‑1    GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        <  1:771831/100‑1      AATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCC                                                                                                      <  1:2693382/100‑1      AATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTAAACGCC                                                                                                      >  2:1045457/1‑100                                                           CTTTTATGTCAGGCAAGGCGTTCGTTGACAGATGTGGCGTGAACGCCTTATCTGACATAAAAGTACCGGAGAATATCTCCGGCATTTTTATTCCACAGC                                                  >  2:1756228/1‑99                                                             TTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA                                               >  2:891781/1‑100                                                                       GCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA                                     >  1:1753572/1‑100                                                                        CAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT                                    >  1:2126283/1‑100                                                                         AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA                                   >  1:410655/1‑100                                                                         AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAAAATATA                                   >  1:1814780/1‑100                                                                             CGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC                               >  2:2270913/1‑100                                                                                                 actAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCAT           <  1:2634073/97‑1                                                                                                   GAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTA         <  1:437658/100‑1                                                                                                      CGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACA      <  2:2486695/100‑1                                                                                                      CGCCTTGCCGGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCTACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACA      <  2:2114084/100‑1                                                                                                       GCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAA     <  2:2195456/100‑1                                                                                                       GCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAA     <  1:1629779/100‑1                                                                                                       GCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAAC       <  2:3049760/98‑1                                                                                                         CTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACT   >  1:1497757/1‑100                                                                                                          TTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACGACTG  <  1:1575698/100‑1                                                                                                                                                                                                               GCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3539863‑3539757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  >  NC_000913/3539792‑3539889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.