New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4008400	NA (NA)	9 (0.090)	4/164	NT	NA	noncoding (4/34 nt)	REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4008430	NA (NA)					noncoding (34/34 nt)	REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences

TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4008302‑4008400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGC  <  NC_000913/4008430‑4008327                                                                                                                                                                                                             TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAG                                                                                                         <  2:411683/100‑1     GCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGG                                                                                                     <  2:2945058/100‑1     GCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGG                                                                                                     <  1:1851886/100‑1     GCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGG                                                                                                     >  1:711762/1‑100      tctAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGA                                                                                                    <  1:2577474/97‑1       GAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGAT                                                                                                   <  1:2245275/100‑1       GAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGAT                                                                                                   <  1:2254658/100‑1       GAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGAT                                                                                                   <  1:1287845/100‑1         AGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGAaga                                                                                                 >  2:2577449/1‑97                           CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC                                                                               <  1:335643/100‑1                           CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC                                                                               <  2:1442131/100‑1                           CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC                                                                               <  1:2910866/100‑1                           CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC                                                                               <  1:146707/100‑1                              GGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGAC                                                                            <  1:2801190/100‑1                               GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGAC                                                                            <  1:1695713/99‑1                               GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC                                                                               <  2:3020983/96‑1                                GCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACTT                                                                          <  1:526557/100‑1                                    TATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACTTACTC                                                                      <  2:1865746/100‑1                                                                                                   tgttGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAGGACGCGTCTGGCATCACCGCGAAATAATCTAATGCATGCCACATCCGGCGAATAACG         <  2:277200/94‑1                                                                                                    GTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCC      >  1:1335492/1‑100                                                                                                      CGGATGCGGCGTAAACGCCTTATCCGGCTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCG    <  2:2919439/100‑1                                                                                                       GGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGG   >  1:2830238/1‑100                                                                                                       GGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGG   <  2:2206143/100‑1                                                                                                        GATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGC  <  1:2766255/100‑1                                                                                                        GATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGC  <  2:2927683/100‑1                                                                                                                                                                                                             TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4008302‑4008400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGC  <  NC_000913/4008430‑4008327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.